Protein : Qrob_P0313840.2 Q. robur

Protein Identifier

Qrob_P0313840.2

Organism . Name

Quercus robur

Score

100.0

Score Type

egn

Protein Description

(M=2) K03859 - phosphatidylinositol glycan, class C

Code Enzyme

EC:2.4.1.198

Gene Prediction Quality

validated

Protein length

Sequence

Length: 268

Kegg Orthology

K03859

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0 Synonyms

3 GO Terms

Identifier	Name	Description
GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006506	GPI anchor biosynthetic process	The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage.
GO:0017176	phosphatidylinositol N-acetylglucosaminyltransferase activity	Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + phosphatidylinositol = UDP + N-acetyl-D-glucosaminylphosphatidylinositol.

18 Blast

Analysis	Hit	Start	End	Strand	Length	Note	Hit Coverage	Hit Length	Hit Pident	E Val	Hit Description
blastp_kegg	lcl\|rcu:RCOM_1197150	1	244	+	244	Gaps:8	82.62	305	75.00	3e-124	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C putative (EC:2.4.1.198)
blastp_kegg	lcl\|pop:POPTR_0003s07190g	1	232	+	232	Gaps:2	76.41	301	80.43	2e-121	POPTRDRAFT_756997 phosphatidylinositolglycan synthase family protein
blastp_kegg	lcl\|pop:POPTR_0001s16070g	1	235	+	235	Gaps:2	77.41	301	78.97	5e-121	phosphatidylinositolglycan synthase family protein
blastp_kegg	lcl\|vvi:100261218	1	228	+	228	none	75.25	303	81.14	9e-117	putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C-like
blastp_kegg	lcl\|gmx:100796558	1	228	+	228	none	75.25	303	76.32	4e-115	putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C-like
blastp_kegg	lcl\|cmo:103498226	1	224	+	224	none	71.34	314	76.79	1e-114	putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C
blastp_kegg	lcl\|cic:CICLE_v10016094mg	1	228	+	228	Gaps:3	75.00	300	79.56	7e-113	hypothetical protein
blastp_kegg	lcl\|cit:102630001	1	228	+	228	Gaps:3	75.00	300	79.11	3e-112	putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C-like
blastp_kegg	lcl\|tcc:TCM_021016	1	228	+	228	none	75.25	303	82.02	1e-111	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C putative isoform 1
blastp_kegg	lcl\|csv:101226545	1	224	+	224	none	73.93	303	76.79	2e-111	putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C-like
blastp_uniprot_sprot	sp\|Q54M40\|PIGC_DICDI	15	225	+	211	Gaps:8	58.84	345	36.95	1e-32	Putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS Dictyostelium discoideum GN pigC PE 3 SV 1
blastp_uniprot_sprot	sp\|Q92535\|PIGC_HUMAN	15	254	+	240	Gaps:19	77.10	297	34.50	4e-21	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS Homo sapiens GN PIGC PE 2 SV 1
blastp_uniprot_sprot	sp\|Q5PQQ4\|PIGC_RAT	12	254	+	243	Gaps:19	78.11	297	31.90	5e-20	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS Rattus norvegicus GN Pigc PE 2 SV 1
blastp_uniprot_sprot	sp\|Q9CXR4\|PIGC_MOUSE	3	254	+	252	Gaps:22	80.13	297	31.51	9e-20	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS Mus musculus GN Pigc PE 2 SV 1
blastp_uniprot_sprot	sp\|Q3ZBX1\|PIGC_BOVIN	15	254	+	240	Gaps:19	77.10	297	33.19	1e-19	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS Bos taurus GN PIGC PE 2 SV 1
blastp_uniprot_sprot	sp\|O59802\|GPI2_SCHPO	13	225	+	213	Gaps:11	64.81	324	30.48	2e-19	Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 subunit OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN gpi2 PE 3 SV 1
rpsblast_cdd	gnl\|CDD\|191522	16	251	+	236	Gaps:10	84.33	268	37.17	2e-52	pfam06432 GPI2 Phosphatidylinositol N-acetylglucosaminyltransferase. Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This step involves products of three or four genes in both yeast (GPI1 GPI2 and GPI3) and mammals (GPI1 PIG A PIG H and PIG C) respectively.
rpsblast_kog	gnl\|CDD\|38269	6	247	+	242	Gaps:15	80.48	292	38.30	2e-44	KOG3059 KOG3059 KOG3059 N-acetylglucosaminyltransferase complex subunit PIG-C/GPI2 required for phosphatidylinositol biosynthesis [Lipid transport and metabolism].

18 Domain Motifs

Analysis	Begin	End	Length	Domain Identifier	Cross Ref	Description	Inter Pro
Phobius	179	199	21	TRANSMEMBRANE	none	Region of a membrane-bound protein predicted to be embedded in the membrane.	none
Phobius	62	80	19	TRANSMEMBRANE	none	Region of a membrane-bound protein predicted to be embedded in the membrane.	none
Phobius	119	137	19	TRANSMEMBRANE	none	Region of a membrane-bound protein predicted to be embedded in the membrane.	none
Phobius	206	225	20	TRANSMEMBRANE	none	Region of a membrane-bound protein predicted to be embedded in the membrane.	none
Phobius	149	167	19	TRANSMEMBRANE	none	Region of a membrane-bound protein predicted to be embedded in the membrane.	none
Phobius	89	107	19	TRANSMEMBRANE	none	Region of a membrane-bound protein predicted to be embedded in the membrane.	none
Phobius	261	267	7	CYTOPLASMIC_DOMAIN	none	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	none
Phobius	200	205	6	CYTOPLASMIC_DOMAIN	none	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	none
PIRSF	2	261	260	PIRSF016104	"KEGG:00563+2.4.1.198","UniPathway:UPA00196"	none	IPR009450
Phobius	237	260	24	TRANSMEMBRANE	none	Region of a membrane-bound protein predicted to be embedded in the membrane.	none
PANTHER	1	225	225	PTHR12982	"KEGG:00563+2.4.1.198","UniPathway:UPA00196";signature_desc=PHOSPHATIDYLINOSITOL GLYCAN, CLASS C	none	IPR009450
Pfam	16	242	227	PF06432	"KEGG:00563+2.4.1.198","UniPathway:UPA00196"	Phosphatidylinositol N-acetylglucosaminyltransferase	IPR009450
Phobius	226	236	11	NON_CYTOPLASMIC_DOMAIN	none	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	none
Phobius	168	178	11	NON_CYTOPLASMIC_DOMAIN	none	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	none
Phobius	1	61	61	NON_CYTOPLASMIC_DOMAIN	none	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	none
Phobius	81	88	8	CYTOPLASMIC_DOMAIN	none	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	none
Phobius	108	118	11	NON_CYTOPLASMIC_DOMAIN	none	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	none
Phobius	138	148	11	CYTOPLASMIC_DOMAIN	none	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	none

7 Localization

Analysis	Start	End	Length
TMHMM	116	135	19
TMHMM	206	225	19
TMHMM	148	167	19
TMHMM	87	106	19
TMHMM	235	257	22
TMHMM	182	199	17
TMHMM	61	80	19

9 Qtllist

Qtl Name	Chromosome Name	Linkage Group	Prox Marker	Dist Marker	Position QTL	Pos One	Pos Two	Test Type	Test Value	R 2
Bourran2_2014_nLBD*_3P	Qrob_Chr08	8	v_5216_549	v_11837_70	12,25	0	35,55	lod	2,5951	6
Bourran2_2014_nP*_3P	Qrob_Chr08	8	v_5216_549	v_11837_70	12,19	0	31,97	lod	2,8472	6
Bourran2_2002_QTL11_peak_Bud_burst_A4	Qrob_Chr06	6	s_1C41PA_791	s_1AM1AV_1141	19,17	0	34,57	lod	2,3	2,9
Bourran2_2014_nEpis*_3P	Qrob_Chr08	8	s_1DA4QW_688	s_1DNI7D_820	17,96	0	37,75	lod	2,9745	7,5
Bourran2_2014_nPriBD_A4	Qrob_Chr06	6	v_12930_125	s_1AMZEI_909	34,51	3,36	51,86	lod	1,6747	3,9
Bourran2_2014_nPriLBD*_3P	Qrob_Chr11	11	v_12066_307	s_1B15GJ_447	3,37	0,57	16,17	lod	3,4299	6,9
Champenoux_2015_nEpis_3P	Qrob_Chr11	11	s_1DG9PM_867	s_1BZ083_1312	26,53	25,47	27,72	lod	4.4	8.9
Champenoux_2015_nP_3P	Qrob_Chr06	6	s_1A386O_228	s_1AYZFS_603	27,03	26,47	27,34	lod	2.8	7.2
Bourran2_2014_nPriBD*_3P	Qrob_Chr06	6	s_1B6WLL_980	v_10064_133	11,49	0	31,52	lod	4,1208	9,1

0 Targeting

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