Protein : Qrob_P0304470.2 Q. robur
Protein Identifier  ? Qrob_P0304470.2 Organism . Name  Quercus robur
Score  97.2 Score Type  egn
Protein Description  (M=1) PTHR13301//PTHR13301:SF30 - X-BOX TRANSCRIPTION FACTOR-RELATED // SUBFAMILY NOT NAMED Code Enzyme  EC:2.4.1.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1132  
Kegg Orthology  K10999
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0030244 cellulose biosynthetic process The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
GO:0016760 cellulose synthase (UDP-forming) activity Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1).

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103332444 1 1131 + 1131 Gaps:58 100.00 1099 90.35 0.0 probable cellulose synthase A catalytic subunit 3 [UDP-forming]
blastp_kegg lcl|pper:PRUPE_ppa000557mg 1 1131 + 1131 Gaps:60 100.00 1097 90.25 0.0 hypothetical protein
blastp_kegg lcl|fve:101303329 1 1131 + 1131 Gaps:53 100.00 1094 89.21 0.0 probable cellulose synthase A catalytic subunit 3 [UDP-forming]-like
blastp_kegg lcl|vvi:100242715 1 1131 + 1131 Gaps:60 100.00 1091 91.48 0.0 probable cellulose synthase A catalytic subunit 5 [UDP-forming]-like
blastp_kegg lcl|pop:POPTR_0013s02050g 1 1131 + 1131 Gaps:75 100.00 1104 88.32 0.0 POPTRDRAFT_773643 cellulose synthase 6 family protein
blastp_kegg lcl|pda:103711978 1 1131 + 1131 Gaps:56 100.00 1089 87.70 0.0 probable cellulose synthase A catalytic subunit 5 [UDP-forming]
blastp_kegg lcl|atr:s00022p00086120 1 1131 + 1131 Gaps:60 100.00 1095 89.13 0.0 AMTR_s00022p00086120 hypothetical protein
blastp_kegg lcl|pxb:103961795 1 1131 + 1131 Gaps:60 100.00 1101 85.01 0.0 probable cellulose synthase A catalytic subunit 5 [UDP-forming]
blastp_kegg lcl|pda:103711912 1 1131 + 1131 Gaps:57 100.00 1090 88.81 0.0 probable cellulose synthase A catalytic subunit 5 [UDP-forming]
blastp_kegg lcl|pop:POPTR_0005s02770g 1 1131 + 1131 Gaps:55 100.00 1084 89.30 0.0 cellulose synthase 6 family protein
blastp_pdb 1weo_A 26 99 + 74 none 79.57 93 71.62 1e-30 mol:protein length:93 cellulose synthase catalytic subunit (IRX3)
blastp_uniprot_sprot sp|Q69V23|CESA3_ORYSJ 1 1131 + 1131 Gaps:60 100.00 1093 83.17 0.0 Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS Oryza sativa subsp. japonica GN CESA3 PE 2 SV 1
blastp_uniprot_sprot sp|Q851L8|CESA5_ORYSJ 1 1131 + 1131 Gaps:61 100.00 1092 83.61 0.0 Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS Oryza sativa subsp. japonica GN CESA5 PE 2 SV 1
blastp_uniprot_sprot sp|A2XNT2|CESA5_ORYSI 1 1131 + 1131 Gaps:61 100.00 1092 83.61 0.0 Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS Oryza sativa subsp. indica GN CESA5 PE 3 SV 1
blastp_uniprot_sprot sp|Q6YVM4|CESA6_ORYSJ 1 1131 + 1131 Gaps:63 100.00 1092 81.87 0.0 Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS Oryza sativa subsp. japonica GN CESA6 PE 2 SV 1
blastp_uniprot_sprot sp|Q94JQ6|CESA6_ARATH 1 1130 + 1130 Gaps:67 99.91 1084 72.48 0.0 Cellulose synthase A catalytic subunit 6 [UDP-forming] OS Arabidopsis thaliana GN CESA6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SJ22|CESA9_ARATH 1 1130 + 1130 Gaps:62 99.82 1088 72.10 0.0 Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS Arabidopsis thaliana GN CESA9 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L778|CESA5_ARATH 1 1130 + 1130 Gaps:68 99.91 1069 73.03 0.0 Cellulose synthase A catalytic subunit 5 [UDP-forming] OS Arabidopsis thaliana GN CESA5 PE 1 SV 2
blastp_uniprot_sprot sp|O48947|CESA2_ARATH 1 1130 + 1130 Gaps:70 99.82 1084 72.00 0.0 Cellulose synthase A catalytic subunit 2 [UDP-forming] OS Arabidopsis thaliana GN CESA2 PE 1 SV 1
blastp_uniprot_sprot sp|Q69P51|CESA9_ORYSJ 1 1130 + 1130 Gaps:113 100.00 1055 73.55 0.0 Cellulose synthase A catalytic subunit 9 [UDP-forming] OS Oryza sativa subsp. japonica GN CESA9 PE 2 SV 1
blastp_uniprot_sprot sp|A2Z1C8|CESA9_ORYSI 1 1130 + 1130 Gaps:113 100.00 1055 73.55 0.0 Cellulose synthase A catalytic subunit 9 [UDP-forming] OS Oryza sativa subsp. indica GN CESA9 PE 2 SV 1
rpsblast_cdd gnl|CDD|178055 1 1131 + 1131 Gaps:59 100.00 1094 75.32 0.0 PLN02436 PLN02436 cellulose synthase A.
rpsblast_cdd gnl|CDD|178244 23 1130 + 1108 Gaps:82 99.91 1079 70.41 0.0 PLN02638 PLN02638 cellulose synthase A (UDP-forming) catalytic subunit.
rpsblast_cdd gnl|CDD|178022 1 1130 + 1130 Gaps:85 100.00 1085 71.24 0.0 PLN02400 PLN02400 cellulose synthase.
rpsblast_cdd gnl|CDD|177841 1 1130 + 1130 Gaps:108 100.00 1040 74.42 0.0 PLN02189 PLN02189 cellulose synthase.
rpsblast_cdd gnl|CDD|178503 25 1130 + 1106 Gaps:121 99.90 1044 69.32 0.0 PLN02915 PLN02915 cellulose synthase A [UDP-forming] catalytic subunit.
rpsblast_cdd gnl|CDD|177846 33 1118 + 1086 Gaps:58 93.45 977 69.99 0.0 PLN02195 PLN02195 cellulose synthase A.
rpsblast_cdd gnl|CDD|146277 366 1124 + 759 Gaps:51 99.72 716 79.55 0.0 pfam03552 Cellulose_synt Cellulose synthase. Cellulose an aggregate of unbranched polymers of beta-1 4-linked glucose residues is the major component of wood and thus paper and is synthesised by plants most algae some bacteria and fungi and even some animals. The genes that synthesise cellulose in higher plants differ greatly from the well-characterized genes found in Acetobacter and Agrobacterium sp. More correctly designated as 'cellulose synthase catalytic subunits' plant cellulose synthase (CesA) proteins are integral membrane proteins approximately 1 000 amino acids in length. There are a number of highly conserved residues including several motifs shown to be necessary for processive glycosyltransferase activity.
rpsblast_cdd gnl|CDD|177890 220 1113 + 894 Gaps:169 77.97 1135 52.43 0.0 PLN02248 PLN02248 cellulose synthase-like protein.
rpsblast_cdd gnl|CDD|177842 291 1109 + 819 Gaps:100 93.65 756 37.43 7e-86 PLN02190 PLN02190 cellulose synthase-like protein.

36 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 313 332 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 907 925 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 957 976 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 282 282 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1050 1060 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 215 237 23 PTHR13301 none none none
PANTHER 938 1124 187 PTHR13301 none none none
PANTHER 256 901 646 PTHR13301 none none none
Pfam 30 109 80 PF14569 "KEGG:00500+2.4.1.12","MetaCyc:PWY-1001","UniPathway:UPA00695" Zinc-binding RING-finger IPR027934
Phobius 996 1027 32 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 10 143 134 PTHR13301 none none none
Phobius 873 895 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1080 1090 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 215 237 23 PTHR13301:SF30 none none none
Phobius 1110 1131 22 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 366 911 546 PF03552 none Cellulose synthase IPR005150
Pfam 916 1123 208 PF03552 none Cellulose synthase IPR005150
SUPERFAMILY 25 113 89 SSF57850 none none none
Phobius 977 995 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 534 655 122 SSF53448 none none IPR029044
SUPERFAMILY 380 432 53 SSF53448 none none IPR029044
SUPERFAMILY 773 856 84 SSF53448 none none IPR029044
Phobius 283 301 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 333 872 540 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 302 312 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 938 1124 187 PTHR13301:SF30 none none none
PANTHER 256 901 646 PTHR13301:SF30 none none none
Gene3D 25 115 91 G3DSA:3.30.40.10 none none IPR013083
Phobius 1061 1079 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 926 930 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

8 Localization

Analysis Start End Length
TMHMM 936 958 22
TMHMM 312 331 19
TMHMM 978 1000 22
TMHMM 1057 1079 22
TMHMM 283 305 22
TMHMM 1025 1047 22
TMHMM 871 893 22
TMHMM 1092 1111 19

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting