Protein : Qrob_P0304430.2 Q. robur
Protein Identifier  ? Qrob_P0304430.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10625:SF109 - HISTONE DEACETYLASE 2 (PTHR10625:SF109) Code Enzyme  EC:3.5.1.98
Gene Prediction Quality  validated Protein length 

Sequence

Length: 475  
Kegg Orthology  K06067
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016575 histone deacetylation The modification of histones by removal of acetyl groups.
GO:0004407 histone deacetylase activity Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100244967 1 468 + 468 Gaps:26 98.41 502 83.20 0.0 histone deacetylase 19-like
blastp_kegg lcl|tcc:TCM_007621 1 467 + 467 Gaps:26 98.80 499 81.54 0.0 Histone deacetylase 1 isoform 1
blastp_kegg lcl|vvi:100241833 1 472 + 472 Gaps:30 99.20 502 81.73 0.0 histone deacetylase 19-like
blastp_kegg lcl|cit:102626043 1 468 + 468 Gaps:26 99.00 499 82.59 0.0 histone deacetylase 19-like
blastp_kegg lcl|pop:POPTR_0009s17200g 1 468 + 468 Gaps:27 99.20 499 82.22 0.0 POPTRDRAFT_803954 Histone deacetylase family protein
blastp_kegg lcl|mdm:103422187 1 468 + 468 Gaps:26 99.80 495 80.16 0.0 histone deacetylase 19-like
blastp_kegg lcl|mdm:103412136 1 468 + 468 Gaps:26 99.80 495 80.16 0.0 histone deacetylase 19-like
blastp_kegg lcl|pop:POPTR_0004s21950g 1 468 + 468 Gaps:28 99.00 501 80.44 0.0 Histone deacetylase family protein
blastp_kegg lcl|mdm:103428059 1 467 + 467 Gaps:28 100.00 495 80.20 0.0 histone deacetylase 19-like
blastp_kegg lcl|pmum:103334650 1 468 + 468 Gaps:26 99.80 495 81.58 0.0 histone deacetylase 19
blastp_pdb 3max_C 15 381 + 367 none 100.00 367 66.49 0.0 mol:protein length:367 Histone deacetylase 2
blastp_pdb 3max_B 15 381 + 367 none 100.00 367 66.49 0.0 mol:protein length:367 Histone deacetylase 2
blastp_pdb 3max_A 15 381 + 367 none 100.00 367 66.49 0.0 mol:protein length:367 Histone deacetylase 2
blastp_pdb 4a69_B 15 388 + 374 Gaps:2 100.00 376 60.90 6e-178 mol:protein length:376 HISTONE DEACETYLASE 3
blastp_pdb 4a69_A 15 388 + 374 Gaps:2 100.00 376 60.90 6e-178 mol:protein length:376 HISTONE DEACETYLASE 3
blastp_pdb 3sfh_A 21 370 + 350 Gaps:4 92.06 378 43.68 1e-104 mol:protein length:378 Histone deacetylase 8
blastp_pdb 3sff_A 21 370 + 350 Gaps:4 92.06 378 43.68 1e-104 mol:protein length:378 Histone deacetylase 8
blastp_pdb 1w22_B 21 370 + 350 Gaps:4 92.31 377 43.68 2e-104 mol:protein length:377 HISTONE DEACETYLASE 8
blastp_pdb 1w22_A 21 370 + 350 Gaps:4 92.31 377 43.68 2e-104 mol:protein length:377 HISTONE DEACETYLASE 8
blastp_pdb 1vkg_B 21 370 + 350 Gaps:4 92.31 377 43.68 2e-104 mol:protein length:377 Histone deacetylase 8
blastp_uniprot_sprot sp|O22446|HDA19_ARATH 1 464 + 464 Gaps:26 97.80 501 79.59 0.0 Histone deacetylase 19 OS Arabidopsis thaliana GN HDA19 PE 1 SV 2
blastp_uniprot_sprot sp|P56521|HDA19_MAIZE 3 468 + 466 Gaps:43 97.27 513 73.95 0.0 Probable histone deacetylase 19 OS Zea mays PE 2 SV 1
blastp_uniprot_sprot sp|Q9FML2|HDA6_ARATH 5 462 + 458 Gaps:11 98.73 471 63.44 0.0 Histone deacetylase 6 OS Arabidopsis thaliana GN HDA6 PE 1 SV 1
blastp_uniprot_sprot sp|P56517|HDAC1_CHICK 14 396 + 383 none 79.79 480 67.10 0.0 Histone deacetylase 1 OS Gallus gallus GN HDAC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q4QQW4|HDAC1_RAT 14 396 + 383 none 79.46 482 66.58 0.0 Histone deacetylase 1 OS Rattus norvegicus GN Hdac1 PE 1 SV 1
blastp_uniprot_sprot sp|O09106|HDAC1_MOUSE 14 396 + 383 none 79.46 482 66.58 0.0 Histone deacetylase 1 OS Mus musculus GN Hdac1 PE 1 SV 1
blastp_uniprot_sprot sp|Q32PJ8|HDAC1_BOVIN 14 396 + 383 none 79.46 482 66.58 0.0 Histone deacetylase 1 OS Bos taurus GN HDAC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RAG0|HDAC1_PONAB 14 396 + 383 none 79.46 482 66.32 0.0 Histone deacetylase 1 OS Pongo abelii GN HDAC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q13547|HDAC1_HUMAN 14 396 + 383 none 79.46 482 66.32 0.0 Histone deacetylase 1 OS Homo sapiens GN HDAC1 PE 1 SV 1
blastp_uniprot_sprot sp|O42227|HDA1B_XENLA 14 396 + 383 none 79.79 480 65.54 0.0 Probable histone deacetylase 1-B OS Xenopus laevis GN hdac1-b PE 1 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 33 325 293 PF00850 none Histone deacetylase domain IPR023801
PANTHER 12 474 463 PTHR10625:SF109 none none none
PIRSF 5 473 469 PIRSF037913 none none IPR003084
PRINTS 223 236 14 PR01271 none Histone deacetylase signature IPR003084
PRINTS 71 89 19 PR01271 none Histone deacetylase signature IPR003084
PRINTS 164 180 17 PR01271 none Histone deacetylase signature IPR003084
PRINTS 102 119 18 PR01271 none Histone deacetylase signature IPR003084
PRINTS 240 258 19 PR01271 none Histone deacetylase signature IPR003084
PRINTS 38 55 18 PR01271 none Histone deacetylase signature IPR003084
PRINTS 123 143 21 PR01271 none Histone deacetylase signature IPR003084
PANTHER 12 474 463 PTHR10625 none none IPR000286
SUPERFAMILY 17 381 365 SSF52768 none none none
PRINTS 145 168 24 PR01270 none Histone deacetylase superfamily signature IPR000286
PRINTS 262 272 11 PR01270 none Histone deacetylase superfamily signature IPR000286
PRINTS 177 192 16 PR01270 none Histone deacetylase superfamily signature IPR000286
Gene3D 15 391 377 G3DSA:3.40.800.20 none none IPR023801

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting