Protein : Qrob_P0292030.2 Q. robur
Protein Identifier  ? Qrob_P0292030.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K14016 - ubiquitin fusion degradation protein 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 283  
Kegg Orthology  K14016
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006511 ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101304529 1 282 + 282 Gaps:4 88.54 323 83.92 1e-171 ubiquitin fusion degradation protein 1 homolog
blastp_kegg lcl|pxb:103937083 1 282 + 282 Gaps:3 88.51 322 83.16 7e-171 ubiquitin fusion degradation protein 1 homolog
blastp_kegg lcl|cit:102610628 1 282 + 282 Gaps:4 88.47 321 83.10 3e-166 ubiquitin fusion degradation protein 1 homolog
blastp_kegg lcl|pmum:103335591 1 282 + 282 Gaps:2 88.47 321 83.80 3e-166 ubiquitin fusion degradation protein 1 homolog
blastp_kegg lcl|mtr:MTR_8g105250 1 282 + 282 Gaps:3 88.44 320 82.33 6e-165 Ubiquitin fusion degradation protein
blastp_kegg lcl|cic:CICLE_v10028844mg 1 282 + 282 Gaps:4 88.47 321 82.39 2e-164 hypothetical protein
blastp_kegg lcl|pop:POPTR_0009s12780g 1 282 + 282 Gaps:4 88.54 323 82.52 6e-164 POPTRDRAFT_649311 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa008694mg 1 282 + 282 Gaps:3 88.51 322 82.11 4e-163 hypothetical protein
blastp_kegg lcl|csv:101204569 1 282 + 282 Gaps:2 88.47 321 78.87 3e-160 ubiquitin fusion degradation protein 1 homolog
blastp_kegg lcl|mdm:103445159 1 282 + 282 Gaps:2 88.40 319 79.79 6e-159 ubiquitin fusion degradation protein 1 homolog
blastp_pdb 2yuj_A 1 144 + 144 none 75.79 190 59.03 8e-61 mol:protein length:190 Ubiquitin fusion degradation 1-like
blastp_pdb 1zc1_A 1 154 + 154 Gaps:3 75.48 208 52.23 3e-52 mol:protein length:208 Ubiquitin fusion degradation protein 1
blastp_uniprot_sprot sp|Q9ES53|UFD1_RAT 1 281 + 281 Gaps:27 82.74 307 49.21 6e-74 Ubiquitin fusion degradation protein 1 homolog OS Rattus norvegicus GN Ufd1l PE 1 SV 1
blastp_uniprot_sprot sp|P70362|UFD1_MOUSE 1 281 + 281 Gaps:27 82.74 307 49.21 8e-74 Ubiquitin fusion degradation protein 1 homolog OS Mus musculus GN Ufd1l PE 1 SV 2
blastp_uniprot_sprot sp|Q92890|UFD1_HUMAN 1 281 + 281 Gaps:27 82.74 307 48.82 4e-73 Ubiquitin fusion degradation protein 1 homolog OS Homo sapiens GN UFD1L PE 1 SV 3
blastp_uniprot_sprot sp|Q9VTF9|UFD1_DROME 1 191 + 191 Gaps:8 62.97 316 51.76 2e-66 Ubiquitin fusion degradation protein 1 homolog OS Drosophila melanogaster GN Ufd1-like PE 2 SV 1
blastp_uniprot_sprot sp|P53044|UFD1_YEAST 1 275 + 275 Gaps:36 70.08 361 45.06 5e-54 Ubiquitin fusion degradation protein 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN UFD1 PE 1 SV 1
blastp_uniprot_sprot sp|Q19584|UFD1_CAEEL 1 221 + 221 Gaps:19 66.67 342 42.11 6e-52 Ubiquitin fusion degradation protein 1 homolog OS Caenorhabditis elegans GN ufd-1 PE 3 SV 1
blastp_uniprot_sprot sp|O42915|UFD1_SCHPO 1 191 + 191 Gaps:13 58.48 342 44.00 8e-52 Ubiquitin fusion degradation protein 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN ufd1 PE 2 SV 4
rpsblast_cdd gnl|CDD|190546 1 147 + 147 none 83.52 176 70.07 4e-81 pfam03152 UFD1 Ubiquitin fusion degradation protein UFD1. Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified. This family includes UFD1 a 40kD protein that is essential for vegetative cell viability. The human UFD1 gene is expressed at high levels during embryogenesis especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures including neural crest cells. In addition this gene is deleted in the CATCH-22 (cardiac defects abnormal facies thymic hypoplasia cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects all characterized by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400 and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation.
rpsblast_cdd gnl|CDD|34741 1 153 + 153 Gaps:3 47.13 331 50.64 5e-49 COG5140 UFD1 Ubiquitin fusion-degradation protein [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|178635 17 165 + 149 Gaps:16 29.10 567 35.15 7e-28 PLN03086 PLN03086 PRLI-interacting factor K Provisional.
rpsblast_kog gnl|CDD|37027 1 282 + 282 Gaps:30 85.71 308 56.82 3e-93 KOG1816 KOG1816 KOG1816 Ubiquitin fusion-degradation protein [Posttranslational modification protein turnover chaperones].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 222 282 61 PTHR12555 none none IPR004854
PANTHER 1 197 197 PTHR12555 none none IPR004854
Pfam 1 147 147 PF03152 none Ubiquitin fusion degradation protein UFD1 IPR004854

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1

0 Targeting