Protein : Qrob_P0280540.2 Q. robur
Protein Identifier  ? Qrob_P0280540.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=11) 3.2.1.2 - Beta-amylase. Code Enzyme  EC:3.2.1.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 232  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0000272 polysaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
GO:0016161 beta-amylase activity Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103432207 1 71 + 71 none 22.61 314 71.83 2e-22 beta-amylase 1 chloroplastic-like
blastp_kegg lcl|pmum:103323813 1 71 + 71 none 12.48 569 71.83 9e-22 beta-amylase 1 chloroplastic
blastp_kegg lcl|mdm:103405347 1 71 + 71 none 12.43 571 71.83 1e-21 beta-amylase 1 chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa005431mg 1 71 + 71 none 15.40 461 71.83 1e-21 hypothetical protein
blastp_kegg lcl|csv:101221739 1 71 + 71 none 12.31 577 73.24 9e-21 beta-amylase 1 chloroplastic-like
blastp_kegg lcl|fve:101312918 1 71 + 71 none 12.28 578 71.83 9e-21 beta-amylase 1 chloroplastic-like
blastp_kegg lcl|pxb:103941625 1 71 + 71 none 12.43 571 70.42 1e-20 beta-amylase 1 chloroplastic
blastp_kegg lcl|mdm:103453523 1 71 + 71 none 12.43 571 70.42 1e-20 beta-amylase 1 chloroplastic-like
blastp_kegg lcl|cmo:103483532 1 71 + 71 none 12.31 577 73.24 1e-20 beta-amylase 1 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_1023980 1 71 + 71 none 12.37 574 71.83 8e-20 Beta-amylase putative (EC:3.2.1.2)
blastp_pdb 1b1y_A 1 71 + 71 none 14.20 500 38.03 5e-08 mol:protein length:500 PROTEIN (BETA-AMYLASE)
blastp_pdb 2xgi_A 1 71 + 71 none 13.27 535 38.03 9e-08 mol:protein length:535 BETA-AMYLASE
blastp_pdb 2xgb_A 1 71 + 71 none 13.27 535 38.03 9e-08 mol:protein length:535 BETA-AMYLASE
blastp_pdb 2xg9_A 1 71 + 71 none 13.27 535 38.03 9e-08 mol:protein length:535 BETA-AMYLASE
blastp_pdb 2xfy_A 1 71 + 71 none 13.27 535 38.03 9e-08 mol:protein length:535 BETA-AMYLASE
blastp_pdb 2xfr_A 1 71 + 71 none 13.27 535 38.03 9e-08 mol:protein length:535 BETA-AMYLASE
blastp_pdb 2xff_A 1 71 + 71 none 13.27 535 38.03 9e-08 mol:protein length:535 BETA-AMYLASE
blastp_pdb 2dqx_A 1 59 + 59 none 11.92 495 35.59 6e-06 mol:protein length:495 Beta-amylase
blastp_uniprot_sprot sp|Q9LIR6|BAM1_ARATH 1 71 + 71 none 12.35 575 67.61 7e-20 Beta-amylase 1 chloroplastic OS Arabidopsis thaliana GN BAM1 PE 1 SV 1
blastp_uniprot_sprot sp|O23553|BAM3_ARATH 1 72 + 72 none 13.14 548 50.00 2e-12 Beta-amylase 3 chloroplastic OS Arabidopsis thaliana GN BAM3 PE 1 SV 3
blastp_uniprot_sprot sp|Q8VYW2|BAM9_ARATH 2 94 + 93 Gaps:1 17.54 536 39.36 5e-10 Inactive beta-amylase 9 OS Arabidopsis thaliana GN BAM9 PE 2 SV 1
blastp_uniprot_sprot sp|P16098|AMYB_HORVU 1 71 + 71 none 13.27 535 38.03 3e-07 Beta-amylase OS Hordeum vulgare GN BMY1 PE 1 SV 1
blastp_uniprot_sprot sp|P82993|AMYB_HORVS 1 71 + 71 none 13.27 535 38.03 3e-07 Beta-amylase OS Hordeum vulgare subsp. spontaneum GN BMY1 PE 1 SV 1
blastp_uniprot_sprot sp|P55005|AMYB_MAIZE 1 59 + 59 none 12.09 488 40.68 4e-07 Beta-amylase OS Zea mays GN BMY1 PE 2 SV 1
blastp_uniprot_sprot sp|P93594|AMYB_WHEAT 1 59 + 59 none 11.73 503 40.68 5e-07 Beta-amylase OS Triticum aestivum GN BMY1 PE 2 SV 1
rpsblast_cdd gnl|CDD|177789 1 71 + 71 none 12.39 573 69.01 3e-24 PLN00197 PLN00197 beta-amylase Provisional.
rpsblast_cdd gnl|CDD|178400 1 72 + 72 none 13.14 548 50.00 2e-16 PLN02803 PLN02803 beta-amylase.
rpsblast_cdd gnl|CDD|201755 13 96 + 84 Gaps:9 18.80 399 38.67 5e-09 pfam01373 Glyco_hydro_14 Glycosyl hydrolase family 14. This family are beta amylases.
rpsblast_cdd gnl|CDD|178398 1 59 + 59 none 11.41 517 38.98 3e-07 PLN02801 PLN02801 beta-amylase.
rpsblast_cdd gnl|CDD|177820 1 56 + 56 Gaps:4 11.30 531 40.00 7e-07 PLN02161 PLN02161 beta-amylase.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 2 58 57 PF01373 "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" Glycosyl hydrolase family 14 IPR001554
PANTHER 1 56 56 PTHR31352 none none none
PANTHER 1 56 56 PTHR31352:SF1 none none none
Gene3D 1 58 58 G3DSA:3.20.20.80 none none IPR013781
SUPERFAMILY 4 65 62 SSF51445 none none IPR017853

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting