Protein : Qrob_P0279420.2 Q. robur
Protein Identifier  ? Qrob_P0279420.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=1) PTHR11689:SF14 - VOLTAGE-GATED CLC-TYPE CHLORIDE CHANNEL ERIC Gene Prediction Quality  validated
Protein length 

Sequence

Length: 826  
Kegg Orthology  K05016
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0005247 voltage-gated chloride channel activity Enables the transmembrane transfer of a chloride ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
GO:0006821 chloride transport The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103322789 1 819 + 819 Gaps:27 100.00 792 89.27 0.0 chloride channel protein CLC-d
blastp_kegg lcl|fve:101304179 1 818 + 818 Gaps:27 99.87 794 87.26 0.0 chloride channel protein CLC-d-like
blastp_kegg lcl|pxb:103954144 1 819 + 819 Gaps:28 100.00 793 88.27 0.0 chloride channel protein CLC-d-like
blastp_kegg lcl|mdm:103453107 1 819 + 819 Gaps:28 100.00 793 87.77 0.0 chloride channel protein CLC-d
blastp_kegg lcl|cit:102620212 1 823 + 823 Gaps:26 100.00 799 86.73 0.0 chloride channel protein CLC-d-like
blastp_kegg lcl|pper:PRUPE_ppa023512mg 1 795 + 795 Gaps:30 99.87 766 89.28 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10004375mg 1 795 + 795 Gaps:26 99.87 772 87.81 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0914010 1 822 + 822 Gaps:33 99.62 794 86.73 0.0 chloride channel clc putative
blastp_kegg lcl|gmx:100811908 1 818 + 818 Gaps:29 99.25 801 85.66 0.0 chloride channel protein CLC-d-like
blastp_kegg lcl|vvi:100261408 1 795 + 795 Gaps:27 99.87 771 88.96 0.0 chloride channel ClC6
blastp_pdb 3org_D 78 775 + 698 Gaps:151 96.04 632 29.98 1e-32 mol:protein length:632 CmCLC
blastp_pdb 3org_C 78 775 + 698 Gaps:151 96.04 632 29.98 1e-32 mol:protein length:632 CmCLC
blastp_pdb 3org_B 78 775 + 698 Gaps:151 96.04 632 29.98 1e-32 mol:protein length:632 CmCLC
blastp_pdb 3org_A 78 775 + 698 Gaps:151 96.04 632 29.98 1e-32 mol:protein length:632 CmCLC
blastp_pdb 1kpl_D 77 571 + 495 Gaps:21 64.48 473 30.82 2e-17 mol:protein length:473 putative ClC family chlorine transport prote
blastp_pdb 1kpl_C 77 571 + 495 Gaps:21 64.48 473 30.82 2e-17 mol:protein length:473 putative ClC family chlorine transport prote
blastp_pdb 1kpl_B 77 571 + 495 Gaps:21 64.48 473 30.82 2e-17 mol:protein length:473 putative ClC family chlorine transport prote
blastp_pdb 1kpl_A 77 571 + 495 Gaps:21 64.48 473 30.82 2e-17 mol:protein length:473 putative ClC family chlorine transport prote
blastp_pdb 3q17_B 79 287 + 209 Gaps:18 41.85 466 30.77 4e-13 mol:protein length:466 Sll0855 protein
blastp_pdb 3q17_A 79 287 + 209 Gaps:18 41.85 466 30.77 4e-13 mol:protein length:466 Sll0855 protein
blastp_uniprot_sprot sp|P92943|CLCD_ARATH 1 818 + 818 Gaps:33 99.87 792 84.45 0.0 Chloride channel protein CLC-d OS Arabidopsis thaliana GN CLC-D PE 1 SV 2
blastp_uniprot_sprot sp|Q96282|CLCC_ARATH 40 778 + 739 Gaps:48 90.76 779 48.66 0.0 Chloride channel protein CLC-c OS Arabidopsis thaliana GN CLC-C PE 1 SV 1
blastp_uniprot_sprot sp|P92941|CLCA_ARATH 41 775 + 735 Gaps:50 90.71 775 47.08 0.0 Chloride channel protein CLC-a OS Arabidopsis thaliana GN CLC-A PE 1 SV 2
blastp_uniprot_sprot sp|P92942|CLCB_ARATH 41 775 + 735 Gaps:58 90.90 780 46.97 0.0 Chloride channel protein CLC-b OS Arabidopsis thaliana GN CLC-B PE 1 SV 1
blastp_uniprot_sprot sp|P60300|CLCG_ARATH 43 778 + 736 Gaps:49 91.90 765 47.51 0.0 Putative chloride channel-like protein CLC-g OS Arabidopsis thaliana GN CBSCLC6 PE 3 SV 2
blastp_uniprot_sprot sp|O70496|CLCN7_MOUSE 44 775 + 732 Gaps:61 86.30 803 38.67 3e-120 H(+)/Cl(-) exchange transporter 7 OS Mus musculus GN Clcn7 PE 1 SV 1
blastp_uniprot_sprot sp|P51799|CLCN7_RAT 44 775 + 732 Gaps:61 86.30 803 38.67 3e-120 H(+)/Cl(-) exchange transporter 7 OS Rattus norvegicus GN Clcn7 PE 2 SV 1
blastp_uniprot_sprot sp|Q86AZ6|CLCB_DICDI 41 775 + 735 Gaps:105 92.02 815 34.53 5e-118 Chloride channel protein B OS Dictyostelium discoideum GN clcB PE 3 SV 1
blastp_uniprot_sprot sp|P51798|CLCN7_HUMAN 44 775 + 732 Gaps:75 86.09 805 38.96 7e-117 H(+)/Cl(-) exchange transporter 7 OS Homo sapiens GN CLCN7 PE 1 SV 2
blastp_uniprot_sprot sp|Q4PKH3|CLCN7_BOVIN 44 775 + 732 Gaps:63 85.66 809 37.81 3e-109 H(+)/Cl(-) exchange transporter 7 OS Bos taurus GN CLCN7 PE 2 SV 1

50 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 533 557 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 522 532 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 604 674 71 G3DSA:3.10.580.10 none none none
Gene3D 717 778 62 G3DSA:3.10.580.10 none none none
Phobius 267 286 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 71 71 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 256 266 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 72 95 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 287 343 57 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1 333 333 PTHR11689:SF14 none none none
Phobius 558 562 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PRINTS 259 267 9 PR01120 none Plant CLC chloride channel signature IPR002251
PRINTS 291 298 8 PR01120 none Plant CLC chloride channel signature IPR002251
PRINTS 273 283 11 PR01120 none Plant CLC chloride channel signature IPR002251
PRINTS 49 57 9 PR01120 none Plant CLC chloride channel signature IPR002251
Phobius 582 825 244 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 359 825 467 PTHR11689 none none none
ProSiteProfiles 729 785 57 PS51371 none CBS domain profile. IPR000644
ProSiteProfiles 606 675 70 PS51371 none CBS domain profile. IPR000644
Phobius 475 493 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 385 405 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PRINTS 529 545 17 PR00762 none Chloride channel signature IPR001807
PRINTS 585 599 15 PR00762 none Chloride channel signature IPR001807
PRINTS 174 193 20 PR00762 none Chloride channel signature IPR001807
PRINTS 547 566 20 PR00762 none Chloride channel signature IPR001807
PRINTS 494 514 21 PR00762 none Chloride channel signature IPR001807
PRINTS 143 160 18 PR00762 none Chloride channel signature IPR001807
PRINTS 238 257 20 PR00762 none Chloride channel signature IPR001807
PANTHER 1 333 333 PTHR11689 none none none
Phobius 563 581 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

8 Localization

Analysis Start End Length
TMHMM 499 521 22
TMHMM 533 555 22
TMHMM 348 370 22
TMHMM 267 289 22
TMHMM 475 494 19
TMHMM 232 254 22
TMHMM 116 138 22
TMHMM 76 95 19

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting