Protein : Qrob_P0272040.2 Q. robur
Protein Identifier  ? Qrob_P0272040.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K03253 - translation initiation factor eIF-3 subunit 9 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 719  
Kegg Orthology  K03253
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0005852 eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.
GO:0006413 translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO:0031369 translation initiation factor binding Interacting selectively and non-covalently with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103318763 1 718 + 718 Gaps:12 100.00 722 87.40 0.0 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|pper:PRUPE_ppa002067mg 1 718 + 718 Gaps:12 100.00 722 87.40 0.0 hypothetical protein
blastp_kegg lcl|cmo:103500082 1 717 + 717 Gaps:6 99.58 718 87.97 0.0 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|tcc:TCM_006074 2 691 + 690 Gaps:6 95.82 718 87.50 0.0 Translation initiation factor 3B1 isoform 1
blastp_kegg lcl|gmx:100817394 1 717 + 717 Gaps:7 99.44 718 86.69 0.0 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|gmx:100779711 1 717 + 717 Gaps:7 99.44 718 86.27 0.0 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|rcu:RCOM_0920330 1 717 + 717 Gaps:7 99.44 720 85.61 0.0 Eukaryotic translation initiation factor 3 subunit putative
blastp_kegg lcl|vvi:100244090 1 717 + 717 Gaps:7 99.44 718 87.82 0.0 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|pop:POPTR_0018s02940g 5 714 + 710 Gaps:7 98.75 718 86.60 0.0 Eukaryotic translation initiation factor 3 subunit 9 family protein
blastp_kegg lcl|csv:101213144 1 717 + 717 Gaps:6 99.58 718 87.41 0.0 eukaryotic translation initiation factor 3 subunit B-like
blastp_pdb 2nlw_A 57 156 + 100 Gaps:8 87.62 105 46.74 5e-17 mol:protein length:105 Eukaryotic translation initiation factor 3 su
blastp_pdb 2krb_A 60 147 + 88 Gaps:8 98.77 81 46.25 7e-12 mol:protein length:81 Eukaryotic translation initiation factor 3 su
blastp_uniprot_sprot sp|Q9C5Z1|EIF3B_ARATH 5 714 + 710 Gaps:7 99.58 712 78.14 0.0 Eukaryotic translation initiation factor 3 subunit B OS Arabidopsis thaliana GN TIF3B1 PE 1 SV 1
blastp_uniprot_sprot sp|P56821|EIF3B_TOBAC 1 718 + 718 Gaps:6 99.58 719 81.28 0.0 Eukaryotic translation initiation factor 3 subunit B OS Nicotiana tabacum GN TIF3B1 PE 2 SV 1
blastp_uniprot_sprot sp|Q4G061|EIF3B_RAT 57 692 + 636 Gaps:37 75.91 797 45.95 0.0 Eukaryotic translation initiation factor 3 subunit B OS Rattus norvegicus GN Eif3b PE 1 SV 1
blastp_uniprot_sprot sp|Q8JZQ9|EIF3B_MOUSE 57 692 + 636 Gaps:37 75.34 803 45.95 0.0 Eukaryotic translation initiation factor 3 subunit B OS Mus musculus GN Eif3b PE 1 SV 1
blastp_uniprot_sprot sp|P55884|EIF3B_HUMAN 57 692 + 636 Gaps:37 74.32 814 45.95 0.0 Eukaryotic translation initiation factor 3 subunit B OS Homo sapiens GN EIF3B PE 1 SV 3
blastp_uniprot_sprot sp|A7MB16|EIF3B_BOVIN 57 692 + 636 Gaps:37 76.97 786 45.45 0.0 Eukaryotic translation initiation factor 3 subunit B OS Bos taurus GN EIF3B PE 2 SV 1
blastp_uniprot_sprot sp|Q569Z1|EIF3B_XENLA 57 711 + 655 Gaps:44 91.72 688 44.85 0.0 Eukaryotic translation initiation factor 3 subunit B OS Xenopus laevis GN eif3b PE 2 SV 1
blastp_uniprot_sprot sp|Q1HDZ5|EIF3B_BOMMO 57 686 + 630 Gaps:54 87.48 695 45.39 5e-168 Eukaryotic translation initiation factor 3 subunit B OS Bombyx mori GN eIF3-S9 PE 2 SV 1
blastp_uniprot_sprot sp|Q0IEY3|EIF3B_AEDAE 57 707 + 651 Gaps:67 90.99 688 44.89 5e-166 Eukaryotic translation initiation factor 3 subunit B OS Aedes aegypti GN eIF3-S9 PE 3 SV 1
blastp_uniprot_sprot sp|B0W562|EIF3B_CULQU 40 707 + 668 Gaps:73 93.75 688 43.57 4e-163 Eukaryotic translation initiation factor 3 subunit B OS Culex quinquefasciatus GN eIF3-S9 PE 3 SV 1
rpsblast_cdd gnl|CDD|34929 187 715 + 529 Gaps:72 98.22 561 31.94 2e-76 COG5354 COG5354 Uncharacterized protein contains Trp-Asp (WD) repeat [General function prediction only].
rpsblast_cdd gnl|CDD|149648 408 608 + 201 Gaps:11 100.00 194 42.78 2e-75 pfam08662 eIF2A Eukaryotic translation initiation factor eIF2A. This is a family of eukaryotic translation initiation factors.
rpsblast_kog gnl|CDD|37525 19 717 + 699 Gaps:41 97.71 698 44.72 1e-175 KOG2314 KOG2314 KOG2314 Translation initiation factor 3 subunit b (eIF-3b) [Translation ribosomal structure and biogenesis].
rpsblast_kog gnl|CDD|37526 188 639 + 452 Gaps:48 76.68 566 24.65 4e-31 KOG2315 KOG2315 KOG2315 Predicted translation initiation factor related to eIF-3a [Translation ribosomal structure and biogenesis].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 17 718 702 PTHR14068 none none IPR011400
Pfam 408 608 201 PF08662 none Eukaryotic translation initiation factor eIF2A IPR013979
SUPERFAMILY 50 145 96 SSF54928 none none none
Gene3D 223 374 152 G3DSA:2.130.10.10 none none IPR015943
ProSiteProfiles 60 151 92 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Gene3D 375 600 226 G3DSA:2.120.10.30 none none IPR011042
PANTHER 17 718 702 PTHR14068:SF0 none none none
SUPERFAMILY 222 602 381 SSF82171 none none none
Coils 689 710 22 Coil none none none
Gene3D 61 143 83 G3DSA:3.30.70.330 none none IPR012677
Hamap 41 715 675 MF_03001 none Eukaryotic translation initiation factor 3 subunit B [EIF3B]. IPR011400
PIRSF 6 715 710 PIRSF036424 none none IPR011400

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting