Protein : Qrob_P0271070.2 Q. robur
Protein Identifier  ? Qrob_P0271070.2 Organism . Name  Quercus robur
Score  71.0 Score Type  egn
Protein Description  (M=47) 3.2.1.15 - Polygalacturonase. Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 441  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa018113mg 1 440 + 440 Gaps:71 99.80 510 65.62 0.0 hypothetical protein
blastp_kegg lcl|pmum:103329840 1 440 + 440 Gaps:72 99.80 511 64.51 0.0 polygalacturonase At1g48100
blastp_kegg lcl|gmx:547542 1 440 + 440 Gaps:51 100.00 443 69.53 0.0 polygalacturonase PG1
blastp_kegg lcl|pvu:PHAVU_004G011800g 7 440 + 434 Gaps:39 97.66 427 73.14 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1063390 21 428 + 408 Gaps:43 93.78 466 70.02 0.0 Polygalacturonase precursor putative (EC:3.2.1.67)
blastp_kegg lcl|cam:101493260 1 426 + 426 Gaps:36 96.45 423 73.53 0.0 polygalacturonase At1g48100-like
blastp_kegg lcl|cit:102609721 5 440 + 436 Gaps:33 98.31 473 64.95 0.0 polygalacturonase At1g48100-like
blastp_kegg lcl|tcc:TCM_016905 1 440 + 440 Gaps:38 86.09 532 67.47 0.0 Pectin lyase-like superfamily protein
blastp_kegg lcl|gmx:547543 4 440 + 437 Gaps:50 99.54 439 68.19 0.0 polygalacturonase PG2
blastp_kegg lcl|pop:POPTR_0001s35180g 1 428 + 428 Gaps:23 98.43 446 67.20 0.0 POPTRDRAFT_797858 hypothetical protein
blastp_pdb 1rmg_A 69 410 + 342 Gaps:28 79.15 422 27.84 1e-23 mol:protein length:422 RHAMNOGALACTURONASE A
blastp_pdb 1bhe_A 161 343 + 183 Gaps:34 54.52 376 33.17 2e-21 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 2iq7_G 167 366 + 200 Gaps:21 62.83 339 33.80 1e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_F 167 366 + 200 Gaps:21 62.83 339 33.80 1e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_E 167 366 + 200 Gaps:21 62.83 339 33.80 1e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_D 167 366 + 200 Gaps:21 62.83 339 33.80 1e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_C 167 366 + 200 Gaps:21 62.83 339 33.80 1e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_B 167 366 + 200 Gaps:21 62.83 339 33.80 1e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_A 167 366 + 200 Gaps:21 62.83 339 33.80 1e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 1nhc_F 160 378 + 219 Gaps:24 69.35 336 32.62 3e-18 mol:protein length:336 Polygalacturonase I
blastp_uniprot_sprot sp|Q949Z1|PGLR4_ARATH 64 440 + 377 Gaps:27 84.21 475 46.00 7e-122 Polygalacturonase At1g48100 OS Arabidopsis thaliana GN At1g48100 PE 2 SV 1
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 48 419 + 372 Gaps:20 87.39 444 39.43 5e-91 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|P35336|PGLR_ACTDE 60 393 + 334 Gaps:18 74.52 467 43.39 1e-88 Polygalacturonase OS Actinidia deliciosa PE 2 SV 1
blastp_uniprot_sprot sp|Q7M1E7|PGLR2_CHAOB 61 429 + 369 Gaps:26 74.90 514 40.00 3e-88 Polygalacturonase OS Chamaecyparis obtusa PE 1 SV 1
blastp_uniprot_sprot sp|P43212|PGLR2_CRYJA 67 393 + 327 Gaps:21 66.93 514 42.15 3e-87 Polygalacturonase OS Cryptomeria japonica PE 1 SV 1
blastp_uniprot_sprot sp|Q9LW07|PGLR3_ARATH 64 440 + 377 Gaps:16 84.87 456 40.05 2e-84 Probable polygalacturonase At3g15720 OS Arabidopsis thaliana GN At3g15720 PE 1 SV 1
blastp_uniprot_sprot sp|Q8RY29|ADPG2_ARATH 13 396 + 384 Gaps:26 93.76 433 38.18 6e-84 Polygalacturonase ADPG2 OS Arabidopsis thaliana GN ADPG2 PE 2 SV 2
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 63 395 + 333 Gaps:20 80.97 431 38.68 4e-82 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 68 418 + 351 Gaps:21 83.37 439 39.62 2e-81 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2
blastp_uniprot_sprot sp|Q02096|PGLR_PERAE 68 392 + 325 Gaps:20 73.38 462 41.89 9e-81 Polygalacturonase OS Persea americana PE 2 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 18 21 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SUPERFAMILY 63 428 366 SSF51126 none none IPR011050
Phobius 22 440 419 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 64 433 370 G3DSA:2.160.20.10 none none IPR012334
Phobius 1 21 21 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 98 395 298 PF00295 none Glycosyl hydrolases family 28 IPR000743
PANTHER 64 435 372 PTHR31375:SF7 none none none
SMART 235 256 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 185 234 50 SM00710 none Parallel beta-helix repeats IPR006626
SMART 258 278 21 SM00710 none Parallel beta-helix repeats IPR006626
SMART 288 309 22 SM00710 none Parallel beta-helix repeats IPR006626
PANTHER 64 435 372 PTHR31375 none none none
ProSitePatterns 265 278 14 PS00502 none Polygalacturonase active site. IPR000743
Phobius 1 8 8 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 9 17 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

1 Localization

Analysis Start End Length
SignalP_EUK 1 21 20

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 29   Secretory pathway 1 0.942 0.051 NON-PLANT 29