Protein : Qrob_P0270340.2 Q. robur
Protein Identifier  ? Qrob_P0270340.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K05578 - NADH dehydrogenase I subunit 6 [EC:1.6.5.3] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 177  
Kegg Orthology  K05578
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0008137 NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:18668094 1 176 + 176 none 100.00 176 89.77 9e-106 ndhG CP95_p012 NADH-plastoquinone oxidoreductase subunit 6
blastp_kegg lcl|pper:PrpeC_p075 1 176 + 176 none 100.00 176 89.77 9e-106 ndhG NADH-plastoquinone oxidoreductase subunit 6
blastp_kegg lcl|gmx:3989358 1 176 + 176 none 100.00 176 84.09 3e-99 ndhG GlmaCp071 NADH dehydrogenase subunit 6
blastp_kegg lcl|cam:6797540 1 176 + 176 none 100.00 176 83.52 7e-99 ndhG CiarC_p069 NADH dehydrogenase subunit 6
blastp_kegg lcl|mtr:MetrCp007 1 176 + 176 none 100.00 176 82.95 1e-97 ndhG NADH dehydrogenase subunit 6
blastp_kegg lcl|mtr:MTR_4g006110 1 176 + 176 none 62.86 280 82.95 6e-97 NAD(P)H-quinone oxidoreductase subunit 6
blastp_kegg lcl|csv:101224071 1 176 + 176 none 100.00 176 83.52 7e-97 NAD(P)H-quinone oxidoreductase subunit 6 chloroplastic-like
blastp_kegg lcl|mtr:MTR_7g021710 1 176 + 176 none 62.86 280 82.39 2e-96 NAD(P)H-quinone oxidoreductase subunit 6
blastp_kegg lcl|mtr:MTR_6g042220 1 176 + 176 none 100.00 176 82.39 3e-96 NAD(P)H-quinone oxidoreductase subunit 6
blastp_kegg lcl|csv:3429259 1 176 + 176 none 100.00 176 82.95 6e-96 ndhG CsCp108 NADH dehydrogenase subunit 6
blastp_uniprot_sprot sp|Q49KU5|NU6C_EUCGG 1 176 + 176 none 100.00 176 88.64 8e-106 NAD(P)H-quinone oxidoreductase subunit 6 chloroplastic OS Eucalyptus globulus subsp. globulus GN ndhG PE 3 SV 1
blastp_uniprot_sprot sp|B0Z5I0|NU6C_OENPA 1 176 + 176 none 100.00 176 85.23 7e-101 NAD(P)H-quinone oxidoreductase subunit 6 chloroplastic OS Oenothera parviflora GN ndhG PE 3 SV 1
blastp_uniprot_sprot sp|B0Z596|NU6C_OENGL 1 176 + 176 none 100.00 176 85.23 7e-101 NAD(P)H-quinone oxidoreductase subunit 6 chloroplastic OS Oenothera glazioviana GN ndhG PE 3 SV 1
blastp_uniprot_sprot sp|Q9MTH9|NU6C_OENEH 1 176 + 176 none 100.00 176 85.23 7e-101 NAD(P)H-quinone oxidoreductase subunit 6 chloroplastic OS Oenothera elata subsp. hookeri GN ndhG PE 3 SV 1
blastp_uniprot_sprot sp|B0Z512|NU6C_OENBI 1 176 + 176 none 100.00 176 85.23 7e-101 NAD(P)H-quinone oxidoreductase subunit 6 chloroplastic OS Oenothera biennis GN ndhG PE 3 SV 1
blastp_uniprot_sprot sp|B0Z4S8|NU6C_OENAR 1 176 + 176 none 100.00 176 85.23 7e-101 NAD(P)H-quinone oxidoreductase subunit 6 chloroplastic OS Oenothera argillicola GN ndhG PE 3 SV 1
blastp_uniprot_sprot sp|A1XGT8|NU6C_RANMC 1 176 + 176 none 99.44 177 84.09 7e-101 NAD(P)H-quinone oxidoreductase subunit 6 chloroplastic OS Ranunculus macranthus GN ndhG PE 3 SV 1
blastp_uniprot_sprot sp|Q2PMN5|NU6C_SOYBN 1 176 + 176 none 100.00 176 84.09 1e-100 NAD(P)H-quinone oxidoreductase subunit 6 chloroplastic OS Glycine max GN ndhG PE 3 SV 1
blastp_uniprot_sprot sp|B5LMS3|NU6C_CICAR 1 176 + 176 none 100.00 176 83.52 2e-100 NAD(P)H-quinone oxidoreductase subunit 6 chloroplastic OS Cicer arietinum GN ndhG PE 3 SV 1
blastp_uniprot_sprot sp|Q9BBP1|NU6C_LOTJA 1 176 + 176 none 100.00 176 84.09 5e-100 NAD(P)H-quinone oxidoreductase subunit 6 chloroplastic OS Lotus japonicus GN ndhG PE 3 SV 1
rpsblast_cdd gnl|CDD|176959 1 176 + 176 none 96.70 182 85.80 2e-80 CHL00016 ndhG NADH dehydrogenase subunit 6.
rpsblast_cdd gnl|CDD|180642 14 176 + 163 Gaps:7 79.80 198 32.91 1e-25 PRK06638 PRK06638 NADH:ubiquinone oxidoreductase subunit J Provisional.
rpsblast_cdd gnl|CDD|31181 6 176 + 171 Gaps:8 98.19 166 31.90 1e-14 COG0839 NuoJ NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion].
rpsblast_cdd gnl|CDD|177103 14 176 + 163 Gaps:2 87.77 188 29.09 1e-08 MTH00021 ND6 NADH dehydrogenase subunit 6 Validated.
rpsblast_cdd gnl|CDD|177129 10 171 + 162 Gaps:3 85.48 186 28.93 1e-07 MTH00057 ND6 NADH dehydrogenase subunit 6 Provisional.
rpsblast_cdd gnl|CDD|180562 19 79 + 61 none 69.32 88 40.98 9e-07 PRK06433 PRK06433 NADH dehydrogenase subunit J Provisional.

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 81 91 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 12 29 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 175 176 2 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 11 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 30 35 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 54 58 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 116 151 36 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 152 174 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 20 173 154 PF00499 none NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IPR001457
Phobius 92 115 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 59 80 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 36 53 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

5 Localization

Analysis Start End Length
TMHMM 10 29 19
TMHMM 36 53 17
TMHMM 152 174 22
TMHMM 93 115 22
TMHMM 58 80 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 1 0.998 0.008 NON-PLANT 25