Protein : Qrob_P0270330.2 Q. robur
Protein Identifier  ? Qrob_P0270330.2 Organism . Name  Quercus robur
Score  89.0 Score Type  egn
Protein Description  (M=5) K05579 - NADH dehydrogenase I subunit 7 [EC:1.6.5.3] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1024  
Kegg Orthology  K05579
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0051287 NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO:0016651 oxidoreductase activity, acting on NAD(P)H Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO:0048038 quinone binding Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
GO:0051539 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
GO:0051536 iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
GO:0008137 NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_4g006100 1 1016 + 1016 Gaps:18 99.67 899 89.29 0.0 NAD(P)H-quinone oxidoreductase subunit H
blastp_kegg lcl|mtr:MTR_6g042200 1 802 + 802 Gaps:6 98.44 705 88.62 0.0 NAD(P)H-quinone oxidoreductase subunit H
blastp_kegg lcl|atr:s00456p00012010 1 561 + 561 Gaps:86 99.79 476 94.32 0.0 AMTR_s00456p00012010 hypothetical protein
blastp_kegg lcl|pper:PrpeC_p078 1 381 + 381 none 96.95 393 96.06 0.0 ndhH NADH-plastoquinone oxidoreductase subunit 7
blastp_kegg lcl|pmum:18668097 1 381 + 381 none 96.95 393 96.06 0.0 ndhH CP95_p009 NADH-plastoquinone oxidoreductase subunit 7
blastp_kegg lcl|fve:10251589 1 381 + 381 none 96.95 393 95.01 0.0 ndhH FvH4_C0111 NADH-plastoquinone oxidoreductase subunit 7
blastp_kegg lcl|tcc:ThcaC_p068 1 381 + 381 none 96.95 393 93.70 0.0 ndhH NADH-plastoquinone oxidoreductase subunit 7
blastp_kegg lcl|sot:4099911 1 381 + 381 none 96.95 393 93.18 0.0 ndhH SotuCp081 NADH dehydrogenase 49 kDa subunit
blastp_kegg lcl|vvi:4025072 1 381 + 381 none 96.95 393 93.96 0.0 ndhH ViviCp080 NADH dehydrogenase 49 kDa subunit
blastp_kegg lcl|cam:6797537 1 381 + 381 none 96.95 393 93.44 0.0 ndhH CiarC_p066 NADH dehydrogenase subunit 7
blastp_pdb 3m9s_D 7 383 + 377 Gaps:5 92.42 409 43.92 9e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3m9s_4 7 383 + 377 Gaps:5 92.42 409 43.92 9e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3ias_V 7 383 + 377 Gaps:5 92.42 409 43.92 9e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3ias_M 7 383 + 377 Gaps:5 92.42 409 43.92 9e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3ias_D 7 383 + 377 Gaps:5 92.42 409 43.92 9e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3ias_4 7 383 + 377 Gaps:5 92.42 409 43.92 9e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3iam_D 7 383 + 377 Gaps:5 92.42 409 43.92 9e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3iam_4 7 383 + 377 Gaps:5 92.42 409 43.92 9e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3i9v_D 7 383 + 377 Gaps:5 92.42 409 43.92 9e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3i9v_4 7 383 + 377 Gaps:5 92.42 409 43.92 9e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_uniprot_sprot sp|Q09WW2|NDHH_MORIN 1 381 + 381 none 96.95 393 95.28 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Morus indica GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|B1A990|NDHH_CARPA 1 381 + 381 none 96.95 393 94.75 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Carica papaya GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|B1NWK5|NDHH_MANES 1 381 + 381 none 96.95 393 93.70 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Manihot esculenta GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|Q2L953|NDHH_GOSHI 1 381 + 381 none 96.95 393 92.91 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Gossypium hirsutum GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|Q49KU2|NDHH_EUCGG 1 381 + 381 none 96.95 393 93.96 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Eucalyptus globulus subsp. globulus GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|Q2VEC5|NDHH_SOLTU 1 381 + 381 none 96.95 393 93.18 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Solanum tuberosum GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|Q9M3I5|NDHH_SPIOL 1 381 + 381 none 96.95 393 93.18 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Spinacia oleracea GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZIW2|NDHH_VITVI 1 381 + 381 none 96.95 393 93.96 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Vitis vinifera GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|B5LMS0|NDHH_CICAR 1 381 + 381 none 96.95 393 93.44 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Cicer arietinum GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|Q2MI44|NDHH_SOLLC 1 381 + 381 none 96.95 393 93.18 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Solanum lycopersicum GN ndhH PE 3 SV 1

45 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 523 542 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 399 399 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 648 747 100 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 445 460 16 PS00667 none Respiratory-chain NADH dehydrogenase subunit 1 signature 1. IPR018086
Pfam 124 382 259 PF00346 none Respiratory-chain NADH dehydrogenase, 49 Kd subunit IPR001135
ProSitePatterns 962 973 12 PS00198 none 4Fe-4S ferredoxin-type iron-sulfur binding region signature. IPR017900
Pfam 673 843 171 PF00146 none NADH dehydrogenase IPR001694
Pfam 402 653 252 PF00146 none NADH dehydrogenase IPR001694
Phobius 574 594 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 922 933 12 PS00198 none 4Fe-4S ferredoxin-type iron-sulfur binding region signature. IPR017900
SUPERFAMILY 20 381 362 SSF56762 none none IPR029014
Phobius 773 783 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 808 826 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 47 58 12 PS00535 none Respiratory chain NADH dehydrogenase 49 Kd subunit signature. IPR014029
Hamap 399 846 448 MF_01350 none NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. IPR001694
Gene3D 7 237 231 G3DSA:1.10.645.10 none none IPR029014
Gene3D 238 376 139 G3DSA:1.10.645.10 none none IPR029014
SUPERFAMILY 900 1000 101 SSF54862 none none none
Phobius 595 624 30 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 563 573 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 913 942 30 PS51379 none 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. IPR017896
ProSiteProfiles 953 982 30 PS51379 none 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. IPR017896
Hamap 7 393 387 MF_01358 none NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. IPR022885
Phobius 784 807 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 913 981 69 G3DSA:3.30.70.20 none none none
Hamap 874 1005 132 MF_01351 none NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. IPR010226
Pfam 918 973 56 PF13237 none 4Fe-4S dicluster domain IPR017896
PANTHER 780 852 73 PTHR11432 none none IPR001694
PANTHER 780 852 73 PTHR11432:SF5 none none none
TIGRFAM 859 1020 162 TIGR00403 none ndhI: NADH-plastoquinone oxidoreductase, I subunit IPR004497

6 Localization

Analysis Start End Length
TMHMM 471 490 19
TMHMM 402 424 22
TMHMM 623 645 22
TMHMM 741 763 22
TMHMM 505 527 22
TMHMM 784 806 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting