Protein : Qrob_P0206740.2 Q. robur
Protein Identifier  ? Qrob_P0206740.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) PTHR11552//PTHR11552:SF59 - GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 634  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0050660 flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101513152 1 633 + 633 Gaps:63 96.61 590 67.37 0.0 protein HOTHEAD-like
blastp_kegg lcl|atr:s00069p00163110 28 633 + 606 Gaps:65 93.12 581 61.74 0.0 AMTR_s00069p00163110 hypothetical protein
blastp_kegg lcl|obr:102707523 26 633 + 608 Gaps:68 92.31 585 58.15 0.0 protein HOTHEAD-like
blastp_kegg lcl|brp:103857161 12 633 + 622 Gaps:73 95.15 577 56.28 0.0 protein HOTHEAD-like
blastp_kegg lcl|pmum:103333269 1 633 + 633 Gaps:5 96.39 582 70.05 3e-180 protein HOTHEAD-like
blastp_kegg lcl|tcc:TCM_016166 6 633 + 628 Gaps:13 96.17 574 65.94 9e-172 Glucose-methanol-choline oxidoreductase family protein isoform 1
blastp_kegg lcl|pvu:PHAVU_007G066200g 1 633 + 633 Gaps:2 95.17 580 66.12 1e-170 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1497790 5 633 + 629 Gaps:3 93.59 577 68.70 5e-169 glucose-methanol-choline (gmc) oxidoreductase putative (EC:4.1.2.10)
blastp_kegg lcl|pper:PRUPE_ppa003422mg 1 633 + 633 Gaps:14 96.53 576 65.47 5e-169 hypothetical protein
blastp_kegg lcl|mtr:MTR_1g101760 8 557 + 550 Gaps:96 98.06 463 60.79 4e-167 Choline dehydrogenase
blastp_pdb 3gdp_B 32 633 + 602 Gaps:27 95.01 521 42.42 4e-78 mol:protein length:521 R-oxynitrile lyase isoenzyme 1
blastp_pdb 3gdp_A 32 633 + 602 Gaps:27 95.01 521 42.42 4e-78 mol:protein length:521 R-oxynitrile lyase isoenzyme 1
blastp_pdb 3gdn_B 32 633 + 602 Gaps:27 95.01 521 42.42 4e-78 mol:protein length:521 R-oxynitrile lyase isoenzyme 1
blastp_pdb 3gdn_A 32 633 + 602 Gaps:27 95.01 521 42.42 4e-78 mol:protein length:521 R-oxynitrile lyase isoenzyme 1
blastp_pdb 1ju2_B 32 633 + 602 Gaps:27 92.35 536 42.42 5e-78 mol:protein length:536 hydroxynitrile lyase
blastp_pdb 1ju2_A 32 633 + 602 Gaps:27 92.35 536 42.42 5e-78 mol:protein length:536 hydroxynitrile lyase
blastp_pdb 3nne_H 46 340 + 295 Gaps:57 57.88 546 28.48 5e-12 mol:protein length:546 Choline oxidase
blastp_pdb 3nne_G 46 340 + 295 Gaps:57 57.88 546 28.48 5e-12 mol:protein length:546 Choline oxidase
blastp_pdb 3nne_F 46 340 + 295 Gaps:57 57.88 546 28.48 5e-12 mol:protein length:546 Choline oxidase
blastp_pdb 3nne_E 46 340 + 295 Gaps:57 57.88 546 28.48 5e-12 mol:protein length:546 Choline oxidase
blastp_uniprot_sprot sp|Q9S746|HTH_ARATH 46 633 + 588 Gaps:5 79.46 594 58.05 4e-118 Protein HOTHEAD OS Arabidopsis thaliana GN HTH PE 1 SV 1
blastp_uniprot_sprot sp|Q9SSM2|MDLL_ARATH 33 633 + 601 Gaps:31 86.05 552 52.21 7e-100 (R)-mandelonitrile lyase-like OS Arabidopsis thaliana GN At1g73050 PE 2 SV 1
blastp_uniprot_sprot sp|P52707|MDL3_PRUSE 32 633 + 602 Gaps:24 86.56 573 43.15 2e-80 (R)-mandelonitrile lyase 3 OS Prunus serotina GN MDL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q945K2|MDL2_PRUDU 32 633 + 602 Gaps:27 87.92 563 42.63 3e-77 (R)-mandelonitrile lyase 2 OS Prunus dulcis GN MDL2 PE 1 SV 1
blastp_uniprot_sprot sp|P52706|MDL1_PRUSE 33 633 + 601 Gaps:27 87.74 563 43.12 7e-77 (R)-mandelonitrile lyase 1 OS Prunus serotina GN MDL1 PE 1 SV 1
blastp_uniprot_sprot sp|O24243|MDL1_PRUDU 33 633 + 601 Gaps:21 88.55 559 41.62 2e-76 (R)-mandelonitrile lyase 1 OS Prunus dulcis GN MDL1 PE 2 SV 1
blastp_uniprot_sprot sp|O50048|MDL2_PRUSE 20 633 + 614 Gaps:20 81.08 576 43.90 9e-75 (R)-mandelonitrile lyase 2 OS Prunus serotina GN MDL2 PE 2 SV 1
blastp_uniprot_sprot sp|O82784|MDL4_PRUSE 33 633 + 601 Gaps:28 86.24 574 42.02 2e-71 (R)-mandelonitrile lyase 4 OS Prunus serotina GN MDL4 PE 2 SV 1
blastp_uniprot_sprot sp|Q47944|SDH_GLUOY 46 321 + 276 Gaps:63 54.43 531 33.91 4e-19 L-sorbose 1-dehydrogenase OS Gluconobacter oxydans PE 3 SV 1
blastp_uniprot_sprot sp|Q9WWW2|ALKJ_PSEPU 46 368 + 323 Gaps:70 61.41 552 33.04 4e-18 Alcohol dehydrogenase [acceptor] OS Pseudomonas putida GN alkJ PE 3 SV 1

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 420 439 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 46 322 277 PF00732 none GMC oxidoreductase IPR000172
PANTHER 431 633 203 PTHR11552 none none none
PANTHER 26 381 356 PTHR11552 none none none
Phobius 440 633 194 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSitePatterns 281 295 15 PS00624 none GMC oxidoreductases signature 2. IPR000172
Phobius 26 419 394 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 488 632 145 PF05199 none GMC oxidoreductase IPR007867
PANTHER 431 633 203 PTHR11552:SF59 none none none
PANTHER 26 381 356 PTHR11552:SF59 none none none
SUPERFAMILY 44 315 272 SSF51905 none none none
SUPERFAMILY 588 633 46 SSF51905 none none none
SUPERFAMILY 474 589 116 SSF54373 none none none
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 18 25 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Gene3D 44 162 119 G3DSA:3.50.50.60 none none none
Gene3D 498 512 15 G3DSA:3.50.50.60 none none none
Gene3D 584 633 50 G3DSA:3.50.50.60 none none none
Gene3D 208 329 122 G3DSA:3.50.50.60 none none none
Phobius 7 17 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 25 24
SignalP_EUK 1 25 24
TMHMM 5 24 19

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 2 0.904 0.114 NON-PLANT 25