Protein : Qrob_P0176220.2 Q. robur
Protein Identifier  ? Qrob_P0176220.2 Organism . Name  Quercus robur
Score  59.1 Score Type  egn
Protein Description  (M=4) PTHR11206:SF78 - MATE EFFLUX FAMILY PROTEIN ALF5-RELATED (PTHR11206:SF78) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 404  
Kegg Orthology  K03327
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006855 drug transmembrane transport The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
GO:0015238 drug transmembrane transporter activity Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
GO:0015297 antiporter activity Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out).
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103947665 12 396 + 385 none 79.88 482 71.17 0.0 MATE efflux family protein ALF5-like
blastp_kegg lcl|pxb:103947597 12 396 + 385 none 79.88 482 70.65 0.0 MATE efflux family protein ALF5-like
blastp_kegg lcl|pxb:103932868 12 396 + 385 none 79.38 485 70.91 0.0 MATE efflux family protein ALF5-like
blastp_kegg lcl|pop:POPTR_0131s00210g 12 403 + 392 none 80.82 485 71.43 0.0 aberrant lateral root formation 1 family protein
blastp_kegg lcl|pop:POPTR_0011s11810g 12 403 + 392 none 80.82 485 70.66 0.0 hypothetical protein
blastp_kegg lcl|vvi:100241893 12 400 + 389 none 79.88 487 72.75 0.0 MATE efflux family protein ALF5-like
blastp_kegg lcl|pper:PRUPE_ppa016427mg 12 403 + 392 Gaps:3 79.88 487 72.24 0.0 hypothetical protein
blastp_kegg lcl|mdm:103448706 13 396 + 384 Gaps:6 79.41 476 71.43 0.0 MATE efflux family protein ALF5-like
blastp_kegg lcl|tcc:TCM_046871 13 401 + 389 Gaps:14 69.97 576 68.98 0.0 MATE efflux family protein ALF5
blastp_kegg lcl|mdm:103448705 12 399 + 388 Gaps:2 77.60 500 71.65 0.0 MATE efflux family protein LAL5-like
blastp_pdb 3mku_B 12 377 + 366 Gaps:21 81.52 460 26.13 1e-18 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mku_A 12 377 + 366 Gaps:21 81.52 460 26.13 1e-18 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_B 12 377 + 366 Gaps:21 81.52 460 26.13 1e-18 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_A 12 377 + 366 Gaps:21 81.52 460 26.13 1e-18 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_uniprot_sprot sp|Q9LUH2|ALF5_ARATH 12 391 + 380 none 79.66 477 61.32 5e-161 MATE efflux family protein ALF5 OS Arabidopsis thaliana GN ALF5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LUH3|LAL5_ARATH 13 390 + 378 none 80.60 469 60.05 8e-160 MATE efflux family protein LAL5 OS Arabidopsis thaliana GN LAL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA5|DTX1_ARATH 13 397 + 385 Gaps:6 82.14 476 37.08 1e-78 MATE efflux family protein DTX1 OS Arabidopsis thaliana GN DTX1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA3|MATE6_ARATH 13 388 + 376 Gaps:2 78.99 476 38.03 2e-76 MATE efflux family protein 6 OS Arabidopsis thaliana GN DTXL2 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SIA4|MATE5_ARATH 13 397 + 385 Gaps:6 82.14 476 36.83 8e-76 MATE efflux family protein 5 OS Arabidopsis thaliana GN DTXL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8RWF5|MATE9_ARATH 13 388 + 376 none 77.85 483 36.44 1e-75 MATE efflux family protein 9 OS Arabidopsis thaliana GN DTXL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LYT3|TT12_ARATH 12 401 + 390 Gaps:10 76.13 507 37.31 2e-75 Protein TRANSPARENT TESTA 12 OS Arabidopsis thaliana GN TT12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA1|MATE8_ARATH 13 396 + 384 none 80.50 477 35.16 1e-72 MATE efflux family protein 8 OS Arabidopsis thaliana GN DTXL4 PE 3 SV 2
blastp_uniprot_sprot sp|Q8GXM8|MATE7_ARATH 13 398 + 386 Gaps:2 80.67 476 34.90 1e-71 MATE efflux family protein 7 OS Arabidopsis thaliana GN DTXL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9USK3|YJ2D_SCHPO 13 363 + 351 Gaps:9 64.94 539 34.00 5e-53 Uncharacterized transporter C4B3.13 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC4B3.13 PE 3 SV 1
rpsblast_cdd gnl|CDD|162043 12 307 + 296 Gaps:5 86.84 342 30.64 5e-37 TIGR00797 matE putative efflux protein MATE family. The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus a putative ethionine resistance protein of Saccharomyces cerevisiae and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
rpsblast_cdd gnl|CDD|30880 12 394 + 383 Gaps:7 84.40 455 25.52 6e-33 COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms].
rpsblast_cdd gnl|CDD|179333 35 379 + 345 Gaps:23 75.44 456 26.16 2e-31 PRK01766 PRK01766 multidrug efflux protein Reviewed.
rpsblast_cdd gnl|CDD|190033 12 348 + 337 Gaps:4 98.76 161 44.03 5e-17 pfam01554 MatE MatE. The MatE domain.
rpsblast_cdd gnl|CDD|166843 38 379 + 342 Gaps:27 75.65 464 24.22 8e-12 PRK00187 PRK00187 multidrug efflux protein NorA Provisional.
rpsblast_kog gnl|CDD|36561 12 396 + 385 Gaps:2 80.97 473 41.51 3e-84 KOG1347 KOG1347 KOG1347 Uncharacterized membrane protein predicted efflux pump [General function prediction only].

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 199 217 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 105 127 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 33 33 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 128 132 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 361 382 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 133 157 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 94 104 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 12 389 378 PTHR11206 none none none
Phobius 356 360 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 333 355 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 286 304 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 76 93 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 262 285 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 305 326 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 218 241 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 177 198 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 12 389 378 PTHR11206:SF78 none none none
Phobius 383 403 21 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 158 176 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 327 332 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 12 121 110 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Pfam 189 348 160 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
TIGRFAM 12 363 352 TIGR00797 "Reactome:REACT_15518","Reactome:REACT_20633" matE: MATE efflux family protein IPR002528
Phobius 242 261 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 57 75 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 34 56 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

9 Localization

Analysis Start End Length
TMHMM 362 381 19
TMHMM 36 58 22
TMHMM 106 128 22
TMHMM 79 101 22
TMHMM 301 323 22
TMHMM 135 157 22
TMHMM 187 209 22
TMHMM 264 286 22
TMHMM 330 352 22

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting