Protein : Qrob_P0112640.2 Q. robur
Protein Identifier  ? Qrob_P0112640.2 Organism . Name  Quercus robur
Score  93.1 Score Type  egn
Protein Description  (M=1) 3.1.11.2 - Exodeoxyribonuclease III. Code Enzyme  EC:3.1.11.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 326  
Kegg Orthology  K02830
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100255740 1 325 + 325 Gaps:27 99.33 300 88.59 0.0 cell cycle checkpoint protein RAD1-like
blastp_kegg lcl|mdm:103448178 1 324 + 324 Gaps:27 98.02 303 85.52 0.0 cell cycle checkpoint protein RAD1
blastp_kegg lcl|pxb:103930144 2 324 + 323 Gaps:27 97.69 303 85.81 0.0 uncharacterized LOC103930144
blastp_kegg lcl|pop:POPTR_0001s02150g 1 325 + 325 Gaps:27 98.35 303 85.57 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa009135mg 2 325 + 324 Gaps:27 97.38 305 85.52 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10032236mg 1 324 + 324 Gaps:27 98.34 302 84.85 0.0 hypothetical protein
blastp_kegg lcl|cit:102608653 1 324 + 324 Gaps:27 98.34 302 84.85 0.0 cell cycle checkpoint protein RAD1-like
blastp_kegg lcl|sot:102578796 4 325 + 322 Gaps:27 97.04 304 85.08 0.0 cell cycle checkpoint protein RAD1-like
blastp_kegg lcl|pmum:103327147 2 325 + 324 Gaps:27 97.38 305 85.19 0.0 uncharacterized LOC103327147
blastp_kegg lcl|tcc:TCM_016562 1 325 + 325 Gaps:27 98.03 304 84.90 0.0 Damaged DNA binding exodeoxyribonuclease IIIs isoform 1
blastp_pdb 3ggr_C 8 319 + 312 Gaps:64 92.20 282 28.46 5e-15 mol:protein length:282 Cell cycle checkpoint protein RAD1
blastp_pdb 3g65_B 8 319 + 312 Gaps:64 92.20 282 28.46 5e-15 mol:protein length:282 Cell cycle checkpoint protein RAD1
blastp_pdb 3a1j_C 8 318 + 311 Gaps:64 98.48 263 28.57 5e-15 mol:protein length:263 Cell cycle checkpoint protein RAD1
blastp_uniprot_sprot sp|Q9QWZ1|RAD1_MOUSE 8 319 + 312 Gaps:64 92.86 280 30.00 2e-16 Cell cycle checkpoint protein RAD1 OS Mus musculus GN Rad1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5R7X9|RAD1_PONAB 8 319 + 312 Gaps:64 92.20 282 28.46 2e-14 Cell cycle checkpoint protein RAD1 OS Pongo abelii GN RAD1 PE 2 SV 1
blastp_uniprot_sprot sp|O60671|RAD1_HUMAN 8 319 + 312 Gaps:64 92.20 282 28.46 2e-14 Cell cycle checkpoint protein RAD1 OS Homo sapiens GN RAD1 PE 1 SV 1
rpsblast_cdd gnl|CDD|48351 9 284 + 276 Gaps:51 93.15 248 25.11 2e-26 cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity providing a DNA-bound platform for the attachment of the polymerase. The trimeric PCNA ring is structurally similar to the dimeric ring formed by the DNA polymerase processivity factors in bacteria (beta subunit DNA polymerase III holoenzyme) and in bacteriophages (catalytic subunits in T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. PCNA is also involved with proteins involved in cell cycle processes such as DNA repair and apoptosis. Many of these proteins contain a highly conserved motif known as the PIP-box (PCNA interacting protein box) which contains the sequence Qxx[LIM]xxF[FY]. .
rpsblast_cdd gnl|CDD|190225 13 284 + 272 Gaps:62 98.01 251 28.86 1e-17 pfam02144 Rad1 Repair protein Rad1/Rec1/Rad17.
rpsblast_kog gnl|CDD|38404 7 267 + 261 Gaps:37 83.87 279 22.65 2e-12 KOG3194 KOG3194 KOG3194 Checkpoint 9-1-1 complex RAD1 component [Energy production and conversion Replication recombination and repair].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 176 283 108 SSF55979 none none none
PANTHER 4 320 317 PTHR10870 none none IPR003021
PRINTS 54 70 17 PR01245 none Repair protein Rad1/Rec1 family signature IPR003021
PRINTS 245 262 18 PR01245 none Repair protein Rad1/Rec1 family signature IPR003021
PRINTS 10 27 18 PR01245 none Repair protein Rad1/Rec1 family signature IPR003021
PRINTS 304 319 16 PR01245 none Repair protein Rad1/Rec1 family signature IPR003021
Pfam 10 260 251 PF02144 none Repair protein Rad1/Rec1/Rad17 IPR003021
Gene3D 175 259 85 G3DSA:3.70.10.10 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting