Protein : Qrob_P0106590.2 Q. robur
Protein Identifier  ? Qrob_P0106590.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=16) PF01348 - Type II intron maturase Gene Prediction Quality  validated
Protein length 

Sequence

Length: 211  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006397 mRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100264128 5 210 + 206 Gaps:32 31.44 757 71.43 7e-110 putative COX1/OXI3 intron 2 protein-like
blastp_kegg lcl|tcc:TCM_033550 5 210 + 206 Gaps:32 31.73 750 69.75 3e-108 RNA-directed DNA polymerase
blastp_kegg lcl|cit:102607317 5 210 + 206 Gaps:32 29.75 800 67.23 5e-102 uncharacterized LOC102607317
blastp_kegg lcl|mdm:103448365 3 210 + 208 Gaps:32 31.33 766 63.33 1e-98 uncharacterized LOC103448365
blastp_kegg lcl|mus:103971981 3 209 + 207 Gaps:32 31.74 753 62.76 1e-96 uncharacterized protein LOC103971981
blastp_kegg lcl|rcu:RCOM_0160820 5 210 + 206 Gaps:32 31.69 751 63.45 2e-95 RNA binding protein putative
blastp_kegg lcl|gmx:100817946 3 210 + 208 Gaps:32 32.79 732 61.25 5e-95 uncharacterized LOC100817946
blastp_kegg lcl|sita:101757037 3 210 + 208 Gaps:32 39.54 607 60.83 5e-95 uncharacterized LOC101757037
blastp_kegg lcl|brp:103847334 5 209 + 205 Gaps:32 31.56 751 61.18 3e-94 uncharacterized LOC103847334
blastp_kegg lcl|fve:101298146 3 210 + 208 Gaps:32 29.85 804 62.50 3e-94 uncharacterized protein LOC101298146
rpsblast_cdd gnl|CDD|110356 10 119 + 110 Gaps:24 81.69 142 29.31 4e-07 pfam01348 Intron_maturas2 Type II intron maturase. Group II introns use intron-encoded reverse transcriptase maturase and DNA endonuclease activities for site-specific insertion into DNA. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. It has been shown that a specific region of the aI2 intron is needed for the maturase function. This region was found to be conserved in group II introns and called domain X.

1 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 15 81 67 PF01348 none Type II intron maturase IPR024937

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting