Protein : Qrob_P0080580.2 Q. robur
Protein Identifier  ? Qrob_P0080580.2 Organism . Name  Quercus robur
Score  93.3 Score Type  egn
Protein Description  (M=34) K05391 - cyclic nucleotide gated channel, other eukaryote Gene Prediction Quality  validated
Protein length 

Sequence

Length: 312  
Kegg Orthology  K05391
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Protein Sequence Displayer

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0 Synonyms

0 GO Terms

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103928207 34 292 + 259 Gaps:19 36.22 740 51.12 2e-73 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pper:PRUPE_ppa027218mg 31 292 + 262 Gaps:6 46.79 560 46.95 5e-73 hypothetical protein
blastp_kegg lcl|mdm:103441842 34 292 + 259 Gaps:21 42.32 638 50.00 1e-72 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|fve:101296790 34 292 + 259 Gaps:25 42.88 639 48.18 5e-72 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pxb:103926820 34 292 + 259 Gaps:19 18.43 1454 51.12 4e-71 uncharacterized LOC103926820
blastp_kegg lcl|eus:EUTSA_v10012801mg 34 292 + 259 Gaps:16 37.69 719 46.86 5e-71 hypothetical protein
blastp_kegg lcl|pmum:103319382 34 292 + 259 Gaps:25 41.31 673 47.84 7e-71 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|sly:101250084 34 292 + 259 Gaps:11 37.57 708 46.24 1e-70 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|sot:102583090 34 292 + 259 Gaps:11 37.57 708 45.86 2e-70 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|cit:102623213 34 292 + 259 Gaps:14 38.61 676 45.21 3e-70 cyclic nucleotide-gated ion channel 1-like
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 34 292 + 259 Gaps:12 37.29 716 45.32 8e-71 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SKD7|CNGC3_ARATH 34 292 + 259 Gaps:17 38.24 706 41.85 1e-56 Probable cyclic nucleotide-gated ion channel 3 OS Arabidopsis thaliana GN CNGC3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LNJ0|CNG10_ARATH 34 292 + 259 Gaps:17 37.97 711 37.04 1e-49 Probable cyclic nucleotide-gated ion channel 10 OS Arabidopsis thaliana GN CNGC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q8GWD2|CNG12_ARATH 32 292 + 261 Gaps:20 42.06 649 35.16 2e-46 Probable cyclic nucleotide-gated ion channel 12 OS Arabidopsis thaliana GN CNGC12 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SKD6|CNG11_ARATH 32 292 + 261 Gaps:20 43.96 621 35.53 3e-46 Cyclic nucleotide-gated ion channel 11 OS Arabidopsis thaliana GN CNGC11 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LD40|CNG13_ARATH 34 292 + 259 Gaps:22 38.94 696 38.38 4e-46 Putative cyclic nucleotide-gated ion channel 13 OS Arabidopsis thaliana GN CNGC13 PE 3 SV 2
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 28 292 + 265 Gaps:30 37.88 747 34.98 7e-45 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 28 292 + 265 Gaps:41 38.47 733 34.75 6e-43 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 30 292 + 263 Gaps:29 39.05 717 34.29 3e-41 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SL29|CNG15_ARATH 34 292 + 259 Gaps:19 39.53 678 33.58 7e-37 Putative cyclic nucleotide-gated ion channel 15 OS Arabidopsis thaliana GN CNGC15 PE 3 SV 1
rpsblast_kog gnl|CDD|35719 33 292 + 260 Gaps:41 30.67 727 29.60 2e-32 KOG0498 KOG0498 KOG0498 K+-channel ERG and related proteins contain PAS/PAC sensor domain [Inorganic ion transport and metabolism Signal transduction mechanisms].

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 51 70 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 26 50 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 136 146 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 209 311 103 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 33 217 185 PTHR10217 none none none
PANTHER 262 292 31 PTHR10217 none none none
Phobius 147 167 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 53 212 160 G3DSA:1.10.287.70 none none none
Gene3D 274 288 15 G3DSA:1.10.287.70 none none none
Phobius 168 186 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 110 135 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 262 292 31 PTHR10217:SF465 none none none
Phobius 71 90 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 91 109 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 32 213 182 SSF81324 none none none
SUPERFAMILY 274 290 17 SSF81324 none none none
PANTHER 33 217 185 PTHR10217:SF465 none none none
Phobius 1 25 25 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 187 208 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

4 Localization

Analysis Start End Length
TMHMM 187 209 22
TMHMM 66 88 22
TMHMM 109 131 22
TMHMM 21 43 22

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting