Protein : Qrob_P0059790.2 Q. robur
Protein Identifier  ? Qrob_P0059790.2 Organism . Name  Quercus robur
Score  57.2 Score Type  egn
Protein Description  (M=2) K14505 - cyclin D3, plant Gene Prediction Quality  validated
Protein length 

Sequence

Length: 281  
Kegg Orthology  K14505
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0051726 regulation of cell cycle Any process that modulates the rate or extent of progression through the cell cycle.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100253927 13 280 + 268 Gaps:3 72.31 372 74.35 1e-129 cyclin-D3-1-like
blastp_kegg lcl|pper:PRUPE_ppa015949mg 13 280 + 268 Gaps:14 69.68 376 80.15 1e-129 hypothetical protein
blastp_kegg lcl|mtr:MTR_3g102310 8 265 + 258 Gaps:5 75.00 348 74.33 2e-129 Cyclin D3-1
blastp_kegg lcl|pxb:103950566 8 280 + 273 Gaps:14 71.54 376 78.07 7e-129 cyclin-D3-1-like
blastp_kegg lcl|mdm:103424674 8 280 + 273 Gaps:14 71.54 376 76.95 1e-126 cyclin-D3-1-like
blastp_kegg lcl|tcc:TCM_033764 8 280 + 273 Gaps:2 75.00 364 75.09 2e-124 D3-type cyclin isoform 1
blastp_kegg lcl|pxb:103945321 8 280 + 273 Gaps:14 71.54 376 76.21 4e-124 cyclin-D3-1-like
blastp_kegg lcl|rcu:RCOM_1589280 8 277 + 270 Gaps:6 70.37 378 72.56 1e-122 cyclin d putative
blastp_kegg lcl|mdm:103441082 8 257 + 250 Gaps:6 67.02 376 77.78 1e-121 CYCD3 cyclin-D3-1-like
blastp_kegg lcl|pmum:103320374 13 280 + 268 Gaps:14 69.87 375 79.01 2e-120 cyclin-D3-1-like
blastp_pdb 3g33_D 29 223 + 195 Gaps:12 65.03 306 26.13 1e-11 mol:protein length:306 CCND3 protein
blastp_pdb 3g33_B 29 223 + 195 Gaps:12 65.03 306 26.13 1e-11 mol:protein length:306 CCND3 protein
blastp_pdb 3qhw_D 16 168 + 153 Gaps:16 56.32 261 33.33 1e-06 mol:protein length:261 Cyclin-A2
blastp_pdb 3qhw_B 16 168 + 153 Gaps:16 56.32 261 33.33 1e-06 mol:protein length:261 Cyclin-A2
blastp_pdb 3qhr_D 16 168 + 153 Gaps:16 56.32 261 33.33 1e-06 mol:protein length:261 Cyclin-A2
blastp_pdb 3qhr_B 16 168 + 153 Gaps:16 56.32 261 33.33 1e-06 mol:protein length:261 Cyclin-A2
blastp_pdb 2wxv_D 16 168 + 153 Gaps:12 55.47 265 34.01 1e-06 mol:protein length:265 CYCLIN-A2
blastp_pdb 2wxv_B 16 168 + 153 Gaps:12 55.47 265 34.01 1e-06 mol:protein length:265 CYCLIN-A2
blastp_pdb 2wpa_D 16 168 + 153 Gaps:12 55.47 265 34.01 1e-06 mol:protein length:265 CYCLIN A2
blastp_pdb 2wpa_B 16 168 + 153 Gaps:12 55.47 265 34.01 1e-06 mol:protein length:265 CYCLIN A2
blastp_uniprot_sprot sp|Q9FGQ7|CCD32_ARATH 8 280 + 273 Gaps:18 73.84 367 54.61 2e-84 Cyclin-D3-2 OS Arabidopsis thaliana GN CYCD3-2 PE 2 SV 1
blastp_uniprot_sprot sp|P42753|CCD31_ARATH 13 215 + 203 Gaps:7 55.32 376 57.21 1e-72 Cyclin-D3-1 OS Arabidopsis thaliana GN CYCD3-1 PE 1 SV 3
blastp_uniprot_sprot sp|Q9SN11|CCD33_ARATH 13 277 + 265 Gaps:15 73.68 361 51.88 4e-72 Cyclin-D3-3 OS Arabidopsis thaliana GN CYCD3-3 PE 2 SV 1
blastp_uniprot_sprot sp|Q6YXH8|CCD41_ORYSJ 10 259 + 250 Gaps:21 68.82 356 42.86 8e-43 Cyclin-D4-1 OS Oryza sativa subsp. japonica GN CYCD4-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q10K98|CCD23_ORYSJ 16 203 + 188 Gaps:6 46.42 405 43.62 3e-37 Putative cyclin-D2-3 OS Oryza sativa subsp. japonica GN CYCD2-3 PE 3 SV 1
blastp_uniprot_sprot sp|Q4KYM5|CCD42_ORYSJ 12 156 + 145 Gaps:1 37.60 383 46.53 2e-36 Cyclin-D4-2 OS Oryza sativa subsp. japonica GN CYCD4-2 PE 2 SV 2
blastp_uniprot_sprot sp|P42751|CCD11_ARATH 10 207 + 198 Gaps:6 59.00 339 40.00 5e-36 Cyclin-D1-1 OS Arabidopsis thaliana GN CYCD1-1 PE 1 SV 3
blastp_uniprot_sprot sp|Q8LHA8|CCD22_ORYSJ 16 259 + 244 Gaps:14 69.10 356 38.21 3e-35 Cyclin-D2-2 OS Oryza sativa subsp. japonica GN CYCD2-2 PE 2 SV 1
blastp_uniprot_sprot sp|P42752|CCD21_ARATH 11 230 + 220 Gaps:11 61.77 361 37.67 8e-35 Cyclin-D2-1 OS Arabidopsis thaliana GN CYCD2-1 PE 1 SV 3
blastp_uniprot_sprot sp|Q69QB8|CCD31_ORYSJ 12 259 + 248 Gaps:13 71.05 342 37.04 4e-34 Cyclin-D3-1 OS Oryza sativa subsp. japonica GN CYCD3-1 PE 2 SV 2

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 109 204 96 SSF47954 none none IPR013763
Pfam 108 215 108 PF02984 none Cyclin, C-terminal domain IPR004367
Phobius 12 34 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 16 272 257 PTHR10177:SF166 none none IPR031093
SMART 10 99 90 SM00385 none domain present in cyclins, TFIIB and Retinoblastoma IPR013763
Phobius 1 11 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 35 280 246 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 15 106 92 SSF47954 none none IPR013763
Gene3D 100 208 109 G3DSA:1.10.472.10 none none IPR013763
PANTHER 16 272 257 PTHR10177 none none none
Pfam 16 106 91 PF00134 none Cyclin, N-terminal domain IPR006671
Gene3D 16 99 84 G3DSA:1.10.472.10 none none IPR013763

1 Localization

Analysis Start End Length
TMHMM 12 34 22

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 30   Secretory pathway 2 0.880 0.025 NON-PLANT 30