Protein : Qrob_P0057840.2 Q. robur
Protein Identifier  ? Qrob_P0057840.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) PF12767 - Transcriptional regulator of RNA polII, SAGA, subunit Gene Prediction Quality  validated
Protein length 

Sequence

Length: 279  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0070461 SAGA-type complex A histone acetyltransferase complex that acetylates nucleosomal H3 and H2B and is required for the expression of a subset of Pol II-transcribed genes. The budding yeast complex includes the acetyltransferase Gcn5p, several proteins of the Spt and Ada families, and several TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_029281 32 278 + 247 Gaps:32 73.81 378 47.67 7e-68 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10025826mg 11 274 + 264 Gaps:42 74.09 386 48.25 8e-67 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1443220 43 278 + 236 Gaps:38 71.71 357 51.17 6e-63 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s07460g 32 272 + 241 Gaps:48 72.13 348 51.39 1e-62 POPTRDRAFT_639756 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0918500 7 277 + 271 Gaps:68 74.22 419 45.98 5e-59 hypothetical protein
blastp_kegg lcl|pop:POPTR_0018s03730g 12 277 + 266 Gaps:69 74.94 415 44.37 3e-58 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa006316mg 16 278 + 263 Gaps:45 72.42 417 43.05 3e-58 hypothetical protein
blastp_kegg lcl|pop:POPTR_0003s18630g 32 274 + 243 Gaps:48 72.86 350 49.80 8e-58 POPTRDRAFT_555141 hypothetical protein
blastp_kegg lcl|pmum:103320096 16 278 + 263 Gaps:59 72.08 419 43.38 1e-57 uncharacterized LOC103320096
blastp_kegg lcl|tcc:TCM_036818 9 278 + 270 Gaps:72 76.19 420 44.06 6e-56 hypothetical protein
rpsblast_cdd gnl|CDD|205064 140 220 + 81 Gaps:2 37.62 210 44.30 3e-17 pfam12767 SAGA-Tad1 Transcriptional regulator of RNA polII SAGA subunit. The yeast SAGA complex is a multifunctional coactivator that regulates transcription by RNA polymerase II. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA. The complex can also be conceived of as consisting of two histone-fold-containing core subunits and this family is one of these. As a family it is likely to carry binding regions for interactions with a number of the other components of the complex.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 130 277 148 PTHR21277 none none none
Pfam 86 220 135 PF12767 none Transcriptional regulator of RNA polII, SAGA, subunit IPR024738
PANTHER 130 277 148 PTHR21277:SF7 none none none
PANTHER 104 113 10 PTHR21277 none none none
PANTHER 104 113 10 PTHR21277:SF7 none none none

0 Localization

0 Qtllist

0 Targeting