Protein : Qrob_P0057390.2 Q. robur
Protein Identifier  ? Qrob_P0057390.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 3.4.24.22 - Stromelysin 2. Code Enzyme  EC:3.4.24.22
Gene Prediction Quality  validated Protein length 

Sequence

Length: 367  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0004222 metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0031012 extracellular matrix A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals and bacteria) or be part of the cell (as in plants).
GO:0008237 metallopeptidase activity Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103343064 7 365 + 359 Gaps:14 85.88 425 61.10 2e-145 metalloendoproteinase 1
blastp_kegg lcl|rcu:RCOM_0699860 1 365 + 365 Gaps:11 100.00 364 60.99 2e-145 Metalloendoproteinase 1 precursor putative (EC:3.4.24.7)
blastp_kegg lcl|pop:POPTR_0015s11510g 2 365 + 364 Gaps:10 97.60 375 60.11 1e-142 POPTRDRAFT_902103 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10031870mg 1 359 + 359 Gaps:13 98.11 371 59.62 1e-142 hypothetical protein
blastp_kegg lcl|cit:102616119 1 359 + 359 Gaps:13 98.11 371 59.62 1e-142 metalloendoproteinase 1-like
blastp_kegg lcl|pop:POPTR_0012s10640g 21 365 + 345 Gaps:5 92.76 373 60.98 2e-141 POPTRDRAFT_423154 MATRIX METALLOproteinASE
blastp_kegg lcl|pper:PRUPE_ppa007227mg 4 365 + 362 Gaps:14 97.61 377 58.97 6e-139 hypothetical protein
blastp_kegg lcl|ath:AT1G70170 12 366 + 355 Gaps:13 97.35 378 58.15 2e-138 MMP matrix metalloproteinase
blastp_kegg lcl|aly:ARALYDRAFT_476141 12 366 + 355 Gaps:13 97.35 378 57.88 1e-137 hypothetical protein
blastp_kegg lcl|sly:101055590 12 364 + 353 Gaps:13 97.00 367 60.11 2e-137 SlMMP1 matrix metalloproteinase precursor
blastp_pdb 1su3_B 90 333 + 244 Gaps:48 48.00 450 43.06 7e-34 mol:protein length:450 Interstitial collagenase
blastp_pdb 1su3_A 90 333 + 244 Gaps:48 48.00 450 43.06 7e-34 mol:protein length:450 Interstitial collagenase
blastp_pdb 1slm_A 61 322 + 262 Gaps:47 92.94 255 40.93 4e-33 mol:protein length:255 STROMELYSIN-1
blastp_pdb 3ayu_A 151 322 + 172 Gaps:18 99.40 167 45.78 4e-29 mol:protein length:167 72 kDa type IV collagenase
blastp_pdb 2xs4_A 169 319 + 151 Gaps:17 88.62 167 43.92 3e-28 mol:protein length:167 KARILYSIN PROTEASE
blastp_pdb 2xs3_B 169 319 + 151 Gaps:17 89.16 166 43.92 3e-28 mol:protein length:166 KARILYSIN PROTEASE
blastp_pdb 2xs3_A 169 319 + 151 Gaps:17 89.16 166 43.92 3e-28 mol:protein length:166 KARILYSIN PROTEASE
blastp_pdb 1hov_A 151 319 + 169 Gaps:13 99.39 163 46.30 4e-28 mol:protein length:163 MATRIX METALLOPROTEINASE-2
blastp_pdb 1fbl_A 155 332 + 178 Gaps:21 46.76 370 44.51 6e-28 mol:protein length:370 FIBROBLAST (INTERSTITIAL) COLLAGENASE (MMP-1)
blastp_pdb 4ayk_A 156 319 + 164 Gaps:23 92.90 169 45.86 5e-27 mol:protein length:169 PROTEIN (COLLAGENASE)
blastp_uniprot_sprot sp|P29136|MEP1_SOYBN 5 322 + 318 Gaps:18 98.36 305 50.67 7e-91 Metalloendoproteinase 1 OS Glycine max PE 1 SV 2
blastp_uniprot_sprot sp|P07152|MMP10_RAT 61 325 + 265 Gaps:41 50.42 476 41.67 3e-37 Stromelysin-2 OS Rattus norvegicus GN Mmp10 PE 2 SV 1
blastp_uniprot_sprot sp|P28862|MMP3_MOUSE 60 350 + 291 Gaps:51 55.77 477 37.59 2e-35 Stromelysin-1 OS Mus musculus GN Mmp3 PE 2 SV 2
blastp_uniprot_sprot sp|P13943|MMP1_RABIT 73 332 + 260 Gaps:52 51.28 468 41.67 1e-34 Interstitial collagenase OS Oryctolagus cuniculus GN MMP1 PE 2 SV 1
blastp_uniprot_sprot sp|P57748|MMP20_MOUSE 92 319 + 228 Gaps:42 41.49 482 44.50 1e-34 Matrix metalloproteinase-20 OS Mus musculus GN Mmp20 PE 2 SV 1
blastp_uniprot_sprot sp|O60882|MMP20_HUMAN 86 319 + 234 Gaps:42 42.65 483 42.72 2e-34 Matrix metalloproteinase-20 OS Homo sapiens GN MMP20 PE 1 SV 3
blastp_uniprot_sprot sp|P03957|MMP3_RAT 53 366 + 314 Gaps:49 60.42 475 37.98 3e-34 Stromelysin-1 OS Rattus norvegicus GN Mmp3 PE 1 SV 1
blastp_uniprot_sprot sp|P28863|MMP3_RABIT 61 366 + 306 Gaps:51 58.37 478 37.63 4e-34 Stromelysin-1 OS Oryctolagus cuniculus GN MMP3 PE 2 SV 1
blastp_uniprot_sprot sp|P79287|MMP20_PIG 86 331 + 246 Gaps:42 45.13 483 39.91 6e-34 Matrix metalloproteinase-20 OS Sus scrofa GN MMP20 PE 2 SV 1
blastp_uniprot_sprot sp|O13065|MMP18_XENLA 92 332 + 241 Gaps:44 46.04 467 44.65 6e-34 Matrix metalloproteinase-18 OS Xenopus laevis GN mmp18 PE 2 SV 1

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 153 321 169 SSF55486 none none none
SUPERFAMILY 53 125 73 SSF47090 none none IPR002477
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 117 321 205 G3DSA:3.40.390.10 none none IPR024079
Phobius 343 365 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 3 15 13 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 16 23 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 63 114 52 PF01471 none Putative peptidoglycan binding domain IPR002477
SMART 156 320 165 SM00235 none Zinc-dependent metalloprotease IPR006026
Phobius 1 23 23 SIGNAL_PEPTIDE none Signal peptide region none
PRINTS 185 200 16 PR00138 none Matrixin signature IPR021190
PRINTS 272 297 26 PR00138 none Matrixin signature IPR021190
PRINTS 306 319 14 PR00138 none Matrixin signature IPR021190
PRINTS 209 237 29 PR00138 none Matrixin signature IPR021190
PRINTS 115 128 14 PR00138 none Matrixin signature IPR021190
PANTHER 8 337 330 PTHR10201:SF131 none none none
Gene3D 61 116 56 G3DSA:1.10.101.10 none none IPR002477
PANTHER 8 337 330 PTHR10201 none none none
Phobius 366 366 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 160 319 160 PF00413 none Matrixin IPR001818
Phobius 24 342 319 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

3 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 23 22
SignalP_GRAM_POSITIVE 1 23 22
SignalP_EUK 1 23 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 23   Secretory pathway 1 0.932 0.064 NON-PLANT 23