Protein : Qrob_P0057370.2 Q. robur
Protein Identifier  ? Qrob_P0057370.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) 3.4.24.7 - Interstitial collagenase. Code Enzyme  EC:3.4.24.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 368  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0004222 metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0031012 extracellular matrix A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals and bacteria) or be part of the cell (as in plants).
GO:0008237 metallopeptidase activity Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0699860 1 364 + 364 Gaps:9 99.18 364 65.10 3e-167 Metalloendoproteinase 1 precursor putative (EC:3.4.24.7)
blastp_kegg lcl|pmum:103343064 1 362 + 362 Gaps:13 88.24 425 64.00 2e-165 metalloendoproteinase 1
blastp_kegg lcl|pop:POPTR_0015s11510g 2 364 + 363 Gaps:11 97.60 375 66.12 1e-162 POPTRDRAFT_902103 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa007227mg 1 362 + 362 Gaps:13 99.47 377 64.00 1e-161 hypothetical protein
blastp_kegg lcl|mdm:103416535 1 365 + 365 Gaps:19 98.14 377 65.68 3e-161 metalloendoproteinase 1-like
blastp_kegg lcl|pop:POPTR_0012s10640g 22 365 + 344 Gaps:7 92.49 373 68.12 5e-160 POPTRDRAFT_423154 MATRIX METALLOproteinASE
blastp_kegg lcl|tcc:TCM_010158 4 364 + 361 Gaps:12 98.92 369 66.58 1e-158 Matrixin family protein putative
blastp_kegg lcl|pvu:PHAVU_003G055800g 2 355 + 354 Gaps:11 95.48 376 63.51 3e-158 hypothetical protein
blastp_kegg lcl|cam:101511075 1 364 + 364 Gaps:16 98.14 377 62.70 6e-156 metalloendoproteinase 1-like
blastp_kegg lcl|pxb:103950918 1 363 + 363 Gaps:16 97.87 375 65.67 4e-155 metalloendoproteinase 1
blastp_pdb 1slm_A 50 322 + 273 Gaps:45 97.25 255 41.53 3e-37 mol:protein length:255 STROMELYSIN-1
blastp_pdb 1su3_B 91 319 + 229 Gaps:41 44.44 450 46.00 1e-35 mol:protein length:450 Interstitial collagenase
blastp_pdb 1su3_A 91 319 + 229 Gaps:41 44.44 450 46.00 1e-35 mol:protein length:450 Interstitial collagenase
blastp_pdb 1mnc_A 153 319 + 167 Gaps:17 99.39 163 48.15 1e-30 mol:protein length:163 NEUTROPHIL COLLAGENASE
blastp_pdb 1kbc_B 151 319 + 169 Gaps:17 100.00 164 46.95 2e-30 mol:protein length:164 NEUTROPHIL COLLAGENASE
blastp_pdb 1kbc_A 151 319 + 169 Gaps:17 100.00 164 46.95 2e-30 mol:protein length:164 NEUTROPHIL COLLAGENASE
blastp_pdb 1jan_A 151 319 + 169 Gaps:17 100.00 164 46.95 2e-30 mol:protein length:164 MATRIX METALLO PROTEINASE-8 (PHE79 FORM)
blastp_pdb 2j0t_C 153 319 + 167 Gaps:19 94.12 170 47.50 2e-30 mol:protein length:170 INTERSTITIAL COLLAGENASE
blastp_pdb 2j0t_B 153 319 + 167 Gaps:19 94.12 170 47.50 2e-30 mol:protein length:170 INTERSTITIAL COLLAGENASE
blastp_pdb 2j0t_A 153 319 + 167 Gaps:19 94.12 170 47.50 2e-30 mol:protein length:170 INTERSTITIAL COLLAGENASE
blastp_uniprot_sprot sp|P29136|MEP1_SOYBN 31 322 + 292 Gaps:11 93.44 305 53.68 3e-96 Metalloendoproteinase 1 OS Glycine max PE 1 SV 2
blastp_uniprot_sprot sp|O60882|MMP20_HUMAN 93 329 + 237 Gaps:41 43.48 483 45.71 8e-39 Matrix metalloproteinase-20 OS Homo sapiens GN MMP20 PE 1 SV 3
blastp_uniprot_sprot sp|P57748|MMP20_MOUSE 93 329 + 237 Gaps:41 43.57 482 45.71 1e-38 Matrix metalloproteinase-20 OS Mus musculus GN Mmp20 PE 2 SV 1
blastp_uniprot_sprot sp|P79287|MMP20_PIG 88 329 + 242 Gaps:41 44.51 483 43.72 2e-38 Matrix metalloproteinase-20 OS Sus scrofa GN MMP20 PE 2 SV 1
blastp_uniprot_sprot sp|P13943|MMP1_RABIT 74 327 + 254 Gaps:51 49.36 468 45.02 4e-38 Interstitial collagenase OS Oryctolagus cuniculus GN MMP1 PE 2 SV 1
blastp_uniprot_sprot sp|O18767|MMP20_BOVIN 93 329 + 237 Gaps:41 43.66 481 44.29 6e-38 Matrix metalloproteinase-20 OS Bos taurus GN MMP20 PE 1 SV 1
blastp_uniprot_sprot sp|P28862|MMP3_MOUSE 61 335 + 275 Gaps:47 53.25 477 42.91 1e-36 Stromelysin-1 OS Mus musculus GN Mmp3 PE 2 SV 2
blastp_uniprot_sprot sp|P03957|MMP3_RAT 54 319 + 266 Gaps:44 50.95 475 42.56 1e-36 Stromelysin-1 OS Rattus norvegicus GN Mmp3 PE 1 SV 1
blastp_uniprot_sprot sp|P07152|MMP10_RAT 62 333 + 272 Gaps:42 52.10 476 41.94 2e-36 Stromelysin-2 OS Rattus norvegicus GN Mmp10 PE 2 SV 1
blastp_uniprot_sprot sp|O13065|MMP18_XENLA 87 322 + 236 Gaps:43 45.18 467 45.97 5e-36 Matrix metalloproteinase-18 OS Xenopus laevis GN mmp18 PE 2 SV 1

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 53 126 74 SSF47090 none none IPR002477
Pfam 160 319 160 PF00413 none Matrixin IPR001818
Phobius 366 367 2 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 119 321 203 G3DSA:3.40.390.10 none none IPR024079
PANTHER 9 336 328 PTHR10201:SF131 none none none
Phobius 25 341 317 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 9 336 328 PTHR10201 none none none
PRINTS 209 237 29 PR00138 none Matrixin signature IPR021190
PRINTS 185 200 16 PR00138 none Matrixin signature IPR021190
PRINTS 272 297 26 PR00138 none Matrixin signature IPR021190
PRINTS 116 129 14 PR00138 none Matrixin signature IPR021190
PRINTS 306 319 14 PR00138 none Matrixin signature IPR021190
Phobius 1 24 24 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 63 115 53 PF01471 none Putative peptidoglycan binding domain IPR002477
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SMART 156 320 165 SM00235 none Zinc-dependent metalloprotease IPR006026
Phobius 17 24 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Gene3D 62 118 57 G3DSA:1.10.101.10 none none IPR002477
SUPERFAMILY 152 322 171 SSF55486 none none none
Phobius 3 16 14 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 342 365 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 24 23
TMHMM 5 27 22
SignalP_EUK 1 24 23

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 24   Secretory pathway 1 0.965 0.030 NON-PLANT 24