Protein : Qrob_P0050920.2 Q. robur
Protein Identifier  ? Qrob_P0050920.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR23344//PTHR23344:SF10 - GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE // SUBFAMILY NOT NAMED (PTHR23344:SF10) Code Enzyme  EC:3.1.4.46
Gene Prediction Quality  validated Protein length 

Sequence

Length: 325  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006629 lipid metabolic process The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
GO:0008081 phosphoric diester hydrolase activity Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group.
GO:0006071 glycerol metabolic process The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
GO:0008889 glycerophosphodiester phosphodiesterase activity Catalysis of the reaction: a glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103336551 1 324 + 324 Gaps:8 100.00 330 74.55 1e-178 phosphatidylglycerol phospholipase C
blastp_kegg lcl|pper:PRUPE_ppa008478mg 1 324 + 324 Gaps:8 100.00 330 74.24 2e-176 hypothetical protein
blastp_kegg lcl|vvi:100251767 1 323 + 323 Gaps:6 100.00 325 75.69 6e-172 uncharacterized LOC100251767
blastp_kegg lcl|rcu:RCOM_1329270 11 324 + 314 Gaps:1 94.31 334 73.65 3e-169 glycerophosphoryl diester phosphodiesterase putative
blastp_kegg lcl|pxb:103956577 1 324 + 324 Gaps:5 99.09 330 71.56 2e-168 phosphatidylglycerol phospholipase C
blastp_kegg lcl|pop:POPTR_0013s09060g 12 322 + 311 Gaps:6 92.69 342 74.13 1e-165 POPTRDRAFT_894645 hypothetical protein
blastp_kegg lcl|cit:102625068 5 322 + 318 Gaps:6 99.08 327 70.06 2e-165 phosphatidylglycerol phospholipase C-like
blastp_kegg lcl|fve:101310848 1 324 + 324 Gaps:4 100.00 324 69.75 4e-157 putative glycerophosphoryl diester phosphodiesterase YhdW-like
blastp_kegg lcl|cic:CICLE_v10021219mg 5 322 + 318 Gaps:15 99.06 318 70.16 8e-157 hypothetical protein
blastp_kegg lcl|csv:101229805 1 323 + 323 Gaps:4 99.70 328 67.89 1e-155 uncharacterized LOC101229805
blastp_pdb 2pz0_B 70 309 + 240 Gaps:9 94.05 252 29.96 4e-21 mol:protein length:252 Glycerophosphoryl diester phosphodiesterase
blastp_pdb 2pz0_A 70 309 + 240 Gaps:9 94.05 252 29.96 4e-21 mol:protein length:252 Glycerophosphoryl diester phosphodiesterase
blastp_pdb 3qvq_D 69 306 + 238 Gaps:6 93.65 252 26.27 3e-12 mol:protein length:252 Phosphodiesterase Olei02445
blastp_pdb 3qvq_C 69 306 + 238 Gaps:6 93.65 252 26.27 3e-12 mol:protein length:252 Phosphodiesterase Olei02445
blastp_pdb 3qvq_B 69 306 + 238 Gaps:6 93.65 252 26.27 3e-12 mol:protein length:252 Phosphodiesterase Olei02445
blastp_pdb 3qvq_A 69 306 + 238 Gaps:6 93.65 252 26.27 3e-12 mol:protein length:252 Phosphodiesterase Olei02445
blastp_pdb 1vd6_A 69 307 + 239 Gaps:28 95.98 224 25.58 8e-09 mol:protein length:224 Glycerophosphoryl Diester Phosphodiesterase
blastp_pdb 1v8e_A 69 307 + 239 Gaps:28 95.98 224 25.58 8e-09 mol:protein length:224 putative glycerophosphoryl diester phosphodie
blastp_pdb 1zcc_F 71 165 + 95 Gaps:1 37.90 248 34.04 7e-07 mol:protein length:248 glycerophosphodiester phosphodiesterase
blastp_pdb 1zcc_E 71 165 + 95 Gaps:1 37.90 248 34.04 7e-07 mol:protein length:248 glycerophosphodiester phosphodiesterase
blastp_uniprot_sprot sp|O07592|YHDW_BACSU 71 304 + 234 Gaps:10 95.47 243 25.00 3e-10 Putative glycerophosphoryl diester phosphodiesterase YhdW OS Bacillus subtilis (strain 168) GN yhdW PE 3 SV 1
blastp_uniprot_sprot sp|O14169|PGC1_SCHPO 68 309 + 242 Gaps:21 78.14 311 25.10 1e-07 Phosphatidylglycerol phospholipase C OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC4D7.02c PE 3 SV 2
blastp_uniprot_sprot sp|P54527|YQIK_BACSU 71 310 + 240 Gaps:23 98.35 243 25.94 2e-07 Uncharacterized protein YqiK OS Bacillus subtilis (strain 168) GN yqiK PE 4 SV 2
rpsblast_cdd gnl|CDD|176499 71 300 + 230 Gaps:43 100.00 189 31.75 3e-30 cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs EC 3.1.4.46) and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D EC 3.1.4.41) from spider venom SMases D-like proteins and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols are major sources of carbon and phosphate. Its catalytic mechanism is based on the metal ion-dependent acid-base reaction which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs EC 3.1.4.11). Both GDPD related proteins and PI-PLCs belong to the superfamily of PI-PLC-like phosphodiesterases.
rpsblast_cdd gnl|CDD|176521 73 301 + 229 Gaps:15 99.09 220 28.90 8e-23 cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain most members in this family have an N-terminus that functions as a membrane anchor.
rpsblast_cdd gnl|CDD|176506 69 301 + 233 Gaps:35 100.00 230 29.57 4e-22 cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
rpsblast_cdd gnl|CDD|176524 71 303 + 233 Gaps:6 100.00 233 24.89 4e-19 cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
rpsblast_cdd gnl|CDD|30929 69 307 + 239 Gaps:13 96.50 257 25.40 2e-18 COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion].
rpsblast_cdd gnl|CDD|202508 74 301 + 228 Gaps:16 99.16 238 28.39 2e-16 pfam03009 GDPD Glycerophosphoryl diester phosphodiesterase family. E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388 which suggests that this family may adopt a TIM barrel fold.
rpsblast_cdd gnl|CDD|176511 70 301 + 232 Gaps:37 98.67 226 26.01 6e-16 cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 66 314 249 G3DSA:3.20.20.190 none none IPR017946
Phobius 1 27 27 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 28 49 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 27 312 286 PTHR23344:SF10 none none none
ProSiteProfiles 69 308 240 PS51704 none GP-PDE domain profile. IPR030395
Phobius 50 324 275 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 74 301 228 PF03009 none Glycerophosphoryl diester phosphodiesterase family IPR030395
PANTHER 27 312 286 PTHR23344 none none IPR004129
SUPERFAMILY 69 310 242 SSF51695 none none IPR017946

1 Localization

Analysis Start End Length
TMHMM 28 47 19

0 Qtllist

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 36   Mitochondrion 2 0.157 0.869 NON-PLANT 36