Protein : Qrob_P0042560.2 Q. robur
Protein Identifier  ? Qrob_P0042560.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=35) PF14368 - Probable lipid transfer Gene Prediction Quality  validated
Protein length 

Sequence

Length: 200  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008289 lipid binding Interacting selectively and non-covalently with a lipid.
GO:0006869 lipid transport The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_005951 22 199 + 178 Gaps:3 100.00 177 69.49 1e-81 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
blastp_kegg lcl|mdm:103441091 3 199 + 197 Gaps:3 98.99 198 61.73 4e-77 protein YLS3-like
blastp_kegg lcl|cic:CICLE_v10033694mg 3 188 + 186 Gaps:15 98.05 205 62.19 4e-75 hypothetical protein
blastp_kegg lcl|pxb:103945925 3 150 + 148 none 99.33 149 72.97 2e-72 protein YLS3-like
blastp_kegg lcl|sot:102592056 16 199 + 184 Gaps:8 94.30 193 60.99 8e-71 non-specific lipid-transfer protein-like protein At2g13820-like
blastp_kegg lcl|gmx:100792950 7 190 + 184 Gaps:1 94.87 195 57.30 2e-70 uncharacterized LOC100792950
blastp_kegg lcl|cit:102621405 3 154 + 152 Gaps:5 98.74 159 70.06 2e-70 protein YLS3-like
blastp_kegg lcl|vvi:100254566 14 187 + 174 Gaps:4 90.43 188 66.47 4e-70 uncharacterized LOC100254566
blastp_kegg lcl|pvu:PHAVU_011G181000g 15 190 + 176 Gaps:1 90.31 196 57.63 1e-68 hypothetical protein
blastp_kegg lcl|sly:101247253 28 199 + 172 Gaps:8 87.63 194 62.94 3e-68 non-specific lipid-transfer protein-like protein At2g13820-like
blastp_uniprot_sprot sp|O64864|YLS3_ARATH 16 199 + 184 Gaps:15 92.20 205 50.79 2e-62 Protein YLS3 OS Arabidopsis thaliana GN YLS3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C7F7|UGPI5_ARATH 5 158 + 154 Gaps:15 83.42 193 31.06 2e-13 Uncharacterized GPI-anchored protein At1g27950 OS Arabidopsis thaliana GN At1g27950 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VYI9|NLTL5_ARATH 24 106 + 83 Gaps:4 45.60 182 37.35 1e-08 Non-specific lipid-transfer protein-like protein At5g64080 OS Arabidopsis thaliana GN At5g64080 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZQI8|NLTL2_ARATH 12 109 + 98 Gaps:5 58.58 169 34.34 2e-08 Non-specific lipid-transfer protein-like protein At2g13820 OS Arabidopsis thaliana GN At2g13820 PE 1 SV 1
rpsblast_cdd gnl|CDD|72935 44 106 + 63 Gaps:1 98.41 63 53.23 6e-11 cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI) Lipid Transfer (LT) and Seed Storage (SS) Protein family a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors lipid transfer proteins seed storage proteins and similar proteins. Proteins in this family are known to play important roles in defending plants from insects and pathogens lipid transport between intracellular membranes and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges..
rpsblast_cdd gnl|CDD|206536 16 114 + 99 Gaps:4 100.00 95 30.53 2e-10 pfam14368 LTP_2 Probable lipid transfer. The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines paired in various ways.
rpsblast_cdd gnl|CDD|201103 37 108 + 72 Gaps:5 90.54 74 37.31 2e-08 pfam00234 Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family. This family is composed of trypsin-alpha amylase inhibitors seed storage proteins and lipid transfer proteins from plants.
rpsblast_cdd gnl|CDD|197763 37 114 + 78 Gaps:5 100.00 79 34.18 1e-07 smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 7 18 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SMART 37 114 78 SM00499 none Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family IPR016140
SUPERFAMILY 36 115 80 SSF47699 none none IPR016140
Phobius 29 176 148 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 36 115 80 G3DSA:1.10.110.10 none none none
Phobius 19 28 10 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 177 198 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 199 199 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 17 114 98 PF14368 none Probable lipid transfer IPR016140
Phobius 1 28 28 SIGNAL_PEPTIDE none Signal peptide region none
PRINTS 92 109 18 PR00382 none Plant phospholipid transfer protein signature IPR000528
PRINTS 36 52 17 PR00382 none Plant phospholipid transfer protein signature IPR000528
PRINTS 57 71 15 PR00382 none Plant phospholipid transfer protein signature IPR000528

4 Localization

Analysis Start End Length
TMHMM 176 198 22
SignalP_EUK 1 30 29
TMHMM 4 26 22
SignalP_GRAM_POSITIVE 1 30 29

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 28   Secretory pathway 1 0.976 0.021 NON-PLANT 28