Protein : Qrob_P0040870.2 Q. robur
Protein Identifier  ? Qrob_P0040870.2 Organism . Name  Quercus robur
Score  6.1 Score Type  egn
Protein Description  (M=11) PTHR22595:SF37 - CHITINASE-RELATED (PTHR22595:SF37) Code Enzyme  EC:3.2.1.14
Gene Prediction Quality  validated Protein length 

Sequence

Length: 255  
Kegg Orthology  K01183
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0008061 chitin binding Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO:0004568 chitinase activity Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
GO:0006032 chitin catabolic process The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO:0016998 cell wall macromolecule catabolic process The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103432770 4 254 + 251 Gaps:25 100.00 272 56.99 3e-100 endochitinase PR4-like
blastp_kegg lcl|pop:POPTR_0013s12870g 3 254 + 252 Gaps:26 99.64 275 57.30 9e-100 class IV chitinase family protein
blastp_kegg lcl|pop:POPTR_0019s12360g 1 254 + 254 Gaps:25 100.00 275 56.36 3e-99 POPTRDRAFT_574380 hypothetical protein
blastp_kegg lcl|pmum:103322428 4 254 + 251 Gaps:30 98.55 275 56.83 8e-98 endochitinase PR4-like
blastp_kegg lcl|pop:POPTR_0019s12350g 13 254 + 242 Gaps:20 100.00 258 58.91 9e-97 POPTRDRAFT_249950 chitinase family protein
blastp_kegg lcl|tcc:TCM_019912 1 254 + 254 Gaps:25 100.00 271 54.98 6e-96 Carrot EP3-3 chitinase
blastp_kegg lcl|fve:101291199 26 254 + 229 Gaps:22 87.28 283 58.70 8e-96 endochitinase PR4-like
blastp_kegg lcl|cic:CICLE_v10021602mg 1 254 + 254 Gaps:26 100.00 276 53.62 1e-95 hypothetical protein
blastp_kegg lcl|tcc:TCM_019914 6 254 + 249 Gaps:22 97.80 273 56.93 2e-95 Carrot EP3-3 chitinase
blastp_kegg lcl|pper:PRUPE_ppa009844mg 4 254 + 251 Gaps:30 98.55 275 55.72 3e-95 hypothetical protein
blastp_pdb 3hbh_A 78 254 + 177 Gaps:9 86.27 204 55.11 3e-61 mol:protein length:204 Class IV chitinase Chia4-Pa2
blastp_pdb 3hbe_X 78 254 + 177 Gaps:9 86.27 204 55.11 3e-61 mol:protein length:204 Class IV chitinase Chia4-Pa2
blastp_pdb 3hbd_A 78 254 + 177 Gaps:9 86.27 204 55.11 3e-61 mol:protein length:204 Class IV chitinase Chia4-Pa2
blastp_pdb 2cjl_B 78 254 + 177 Gaps:12 90.69 204 44.86 5e-45 mol:protein length:204 SECRETED CHITINASE
blastp_pdb 2cjl_A 78 254 + 177 Gaps:12 90.69 204 44.86 5e-45 mol:protein length:204 SECRETED CHITINASE
blastp_pdb 2dbt_C 78 254 + 177 Gaps:12 69.81 265 44.86 5e-42 mol:protein length:265 chitinase C
blastp_pdb 2dbt_B 78 254 + 177 Gaps:12 69.81 265 44.86 5e-42 mol:protein length:265 chitinase C
blastp_pdb 2dbt_A 78 254 + 177 Gaps:12 69.81 265 44.86 5e-42 mol:protein length:265 chitinase C
blastp_pdb 1wvu_B 78 254 + 177 Gaps:12 69.81 265 44.86 5e-42 mol:protein length:265 chitinase C
blastp_pdb 1wvu_A 78 254 + 177 Gaps:12 69.81 265 44.86 5e-42 mol:protein length:265 chitinase C
blastp_uniprot_sprot sp|P27054|CHI4_PHAVU 26 254 + 229 Gaps:19 91.11 270 54.47 9e-91 Endochitinase PR4 OS Phaseolus vulgaris GN CHI4 PE 2 SV 1
blastp_uniprot_sprot sp|Q6K8R2|CHI6_ORYSJ 27 254 + 228 Gaps:20 90.04 271 54.10 1e-84 Chitinase 6 OS Oryza sativa subsp. japonica GN Cht6 PE 2 SV 1
blastp_uniprot_sprot sp|P29023|CHIB_MAIZE 26 254 + 229 Gaps:25 92.19 269 52.82 1e-81 Endochitinase B (Fragment) OS Zea mays PE 1 SV 1
blastp_uniprot_sprot sp|Q7Y1Z0|CHI5_ORYSJ 26 254 + 229 Gaps:33 89.58 288 50.39 3e-81 Chitinase 5 OS Oryza sativa subsp. japonica GN Cht5 PE 2 SV 1
blastp_uniprot_sprot sp|O04138|CHI4_ORYSJ 26 254 + 229 Gaps:32 90.18 285 50.58 2e-80 Chitinase 4 OS Oryza sativa subsp. japonica GN Cht4 PE 2 SV 2
blastp_uniprot_sprot sp|P42820|CHIP_BETVU 4 254 + 251 Gaps:39 99.31 288 46.50 2e-80 Acidic endochitinase SP2 OS Beta vulgaris GN SP2 PE 1 SV 1
blastp_uniprot_sprot sp|P29022|CHIA_MAIZE 26 254 + 229 Gaps:31 90.71 280 50.00 2e-78 Endochitinase A OS Zea mays PE 1 SV 1
blastp_uniprot_sprot sp|P80052|CHIT_DIOJA 34 254 + 221 Gaps:25 96.00 250 48.33 3e-70 Acidic endochitinase OS Dioscorea japonica PE 1 SV 2
blastp_uniprot_sprot sp|Q06209|CHI4_BRANA 3 254 + 252 Gaps:29 99.63 268 44.19 3e-68 Basic endochitinase CHB4 OS Brassica napus PE 1 SV 2
blastp_uniprot_sprot sp|P52403|CHI1_SOLTU 29 254 + 226 Gaps:56 86.16 318 37.23 1e-47 Endochitinase 1 (Fragment) OS Solanum tuberosum GN CHTB1 PE 2 SV 1

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 27 254 228 PTHR22595:SF37 none none none
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 24 57 34 PF00187 none Chitin recognition protein IPR001002
ProSitePatterns 188 198 11 PS00774 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" Chitinases family 19 signature 2. IPR000726
ProDom 18 57 40 PD000609 none CHITIN-BINDING CHITINASE PRECURSOR SIGNAL GLYCOSIDASE HYDROLASE LECTIN DEGRADATION DIRECT SEQUENCING IPR001002
SUPERFAMILY 25 60 36 SSF57016 none none IPR001002
SMART 26 57 32 SM00270 none Chitin binding domain IPR001002
SUPERFAMILY 77 254 178 SSF53955 none none IPR023346
Gene3D 78 118 41 G3DSA:1.10.530.10 none none none
Gene3D 183 254 72 G3DSA:1.10.530.10 none none none
Phobius 26 254 229 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PIRSF 3 254 252 PIRSF001060 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" none IPR016283
PANTHER 27 254 228 PTHR22595 none none none
Phobius 9 20 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 78 254 177 PF00182 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" Chitinase class I IPR000726
Gene3D 25 63 39 G3DSA:3.30.60.10 none none IPR001002
Phobius 21 25 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Gene3D 129 182 54 G3DSA:3.30.20.10 none none none
Phobius 1 8 8 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
ProSiteProfiles 24 59 36 PS50941 none Chitin-binding type-1 domain profile. IPR001002

2 Localization

Analysis Start End Length
SignalP_EUK 1 20 19
SignalP_GRAM_POSITIVE 1 30 29

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 20   Secretory pathway 2 0.831 0.029 NON-PLANT 20