Protein : Qrob_P0040850.2 Q. robur
Protein Identifier  ? Qrob_P0040850.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=11) PTHR22595:SF37 - CHITINASE-RELATED (PTHR22595:SF37) Code Enzyme  EC:3.2.1.14
Gene Prediction Quality  validated Protein length 

Sequence

Length: 279  
Kegg Orthology  K01183
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0008061 chitin binding Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO:0004568 chitinase activity Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
GO:0006032 chitin catabolic process The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO:0016998 cell wall macromolecule catabolic process The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0019s12360g 1 277 + 277 Gaps:3 99.64 275 71.90 1e-143 POPTRDRAFT_574380 hypothetical protein
blastp_kegg lcl|mdm:103432770 4 277 + 274 Gaps:3 99.63 272 66.79 3e-135 endochitinase PR4-like
blastp_kegg lcl|vvi:100245803 1 277 + 277 Gaps:4 99.64 274 68.13 8e-135 endochitinase PR4-like
blastp_kegg lcl|pmum:103322428 10 277 + 268 Gaps:4 96.00 275 67.05 8e-134 endochitinase PR4-like
blastp_kegg lcl|vvi:100256098 1 277 + 277 Gaps:4 99.64 274 67.77 8e-134 endochitinase PR4-like
blastp_kegg lcl|fve:101291199 6 277 + 272 Gaps:1 95.76 283 65.31 1e-133 endochitinase PR4-like
blastp_kegg lcl|pop:POPTR_0013s12870g 2 277 + 276 Gaps:6 99.64 275 66.06 3e-132 class IV chitinase family protein
blastp_kegg lcl|tcc:TCM_019914 1 277 + 277 Gaps:6 99.27 273 66.42 1e-131 Carrot EP3-3 chitinase
blastp_kegg lcl|pper:PRUPE_ppa009844mg 10 277 + 268 Gaps:4 96.00 275 66.67 1e-131 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10021602mg 1 277 + 277 Gaps:6 99.64 276 63.64 9e-130 hypothetical protein
blastp_pdb 3hbh_A 76 277 + 202 Gaps:7 99.51 204 52.22 5e-65 mol:protein length:204 Class IV chitinase Chia4-Pa2
blastp_pdb 3hbe_X 76 277 + 202 Gaps:7 99.51 204 52.22 5e-65 mol:protein length:204 Class IV chitinase Chia4-Pa2
blastp_pdb 3hbd_A 76 277 + 202 Gaps:7 99.51 204 52.22 5e-65 mol:protein length:204 Class IV chitinase Chia4-Pa2
blastp_pdb 3iwr_B 27 276 + 250 Gaps:39 92.23 309 36.14 9e-49 mol:protein length:309 Chitinase
blastp_pdb 3iwr_A 27 276 + 250 Gaps:39 92.23 309 36.14 9e-49 mol:protein length:309 Chitinase
blastp_pdb 2dkv_A 27 276 + 250 Gaps:39 92.23 309 36.14 9e-49 mol:protein length:309 chitinase
blastp_pdb 3cql_B 77 276 + 200 Gaps:37 95.88 243 39.06 1e-48 mol:protein length:243 Endochitinase
blastp_pdb 3cql_A 77 276 + 200 Gaps:37 95.88 243 39.06 1e-48 mol:protein length:243 Endochitinase
blastp_pdb 2z37_D 76 276 + 201 Gaps:36 96.31 244 37.45 6e-48 mol:protein length:244 Chitinase
blastp_pdb 2z37_C 76 276 + 201 Gaps:36 96.31 244 37.45 6e-48 mol:protein length:244 Chitinase
blastp_uniprot_sprot sp|P27054|CHI4_PHAVU 24 277 + 254 Gaps:4 93.33 270 65.08 2e-119 Endochitinase PR4 OS Phaseolus vulgaris GN CHI4 PE 2 SV 1
blastp_uniprot_sprot sp|Q06209|CHI4_BRANA 4 277 + 274 Gaps:7 99.63 268 58.80 5e-108 Basic endochitinase CHB4 OS Brassica napus PE 1 SV 2
blastp_uniprot_sprot sp|Q7Y1Z0|CHI5_ORYSJ 25 276 + 252 Gaps:10 90.97 288 57.63 6e-105 Chitinase 5 OS Oryza sativa subsp. japonica GN Cht5 PE 2 SV 1
blastp_uniprot_sprot sp|O04138|CHI4_ORYSJ 30 276 + 247 Gaps:9 89.82 285 57.42 8e-103 Chitinase 4 OS Oryza sativa subsp. japonica GN Cht4 PE 2 SV 2
blastp_uniprot_sprot sp|P42820|CHIP_BETVU 2 277 + 276 Gaps:17 99.65 288 55.75 5e-100 Acidic endochitinase SP2 OS Beta vulgaris GN SP2 PE 1 SV 1
blastp_uniprot_sprot sp|P29023|CHIB_MAIZE 13 277 + 265 Gaps:3 98.88 269 56.02 3e-97 Endochitinase B (Fragment) OS Zea mays PE 1 SV 1
blastp_uniprot_sprot sp|P29022|CHIA_MAIZE 30 276 + 247 Gaps:8 90.36 280 56.52 2e-96 Endochitinase A OS Zea mays PE 1 SV 1
blastp_uniprot_sprot sp|Q6K8R2|CHI6_ORYSJ 30 277 + 248 Gaps:7 90.41 271 55.92 3e-93 Chitinase 6 OS Oryza sativa subsp. japonica GN Cht6 PE 2 SV 1
blastp_uniprot_sprot sp|P80052|CHIT_DIOJA 30 276 + 247 Gaps:9 99.20 250 53.23 4e-90 Acidic endochitinase OS Dioscorea japonica PE 1 SV 2
blastp_uniprot_sprot sp|P52404|CHI2_SOLTU 34 276 + 243 Gaps:45 85.44 316 44.07 5e-66 Endochitinase 2 (Fragment) OS Solanum tuberosum GN CHTB2 PE 2 SV 1

25 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 9 9 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
ProDom 30 62 33 PD000609 none CHITIN-BINDING CHITINASE PRECURSOR SIGNAL GLYCOSIDASE HYDROLASE LECTIN DEGRADATION DIRECT SEQUENCING IPR001002
ProSitePatterns 97 119 23 PS00773 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" Chitinases family 19 signature 1. IPR000726
PRINTS 40 47 8 PR00451 none Chitin-binding domain signature IPR001002
PRINTS 47 54 8 PR00451 none Chitin-binding domain signature IPR001002
PRINTS 32 40 9 PR00451 none Chitin-binding domain signature IPR001002
Phobius 30 278 249 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 207 277 71 G3DSA:1.10.530.10 none none none
Gene3D 79 144 66 G3DSA:1.10.530.10 none none none
PIRSF 2 278 277 PIRSF001060 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" none IPR016283
SUPERFAMILY 76 277 202 SSF53955 none none IPR023346
Phobius 10 21 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
ProSitePatterns 212 222 11 PS00774 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" Chitinases family 19 signature 2. IPR000726
ProSiteProfiles 29 64 36 PS50941 none Chitin-binding type-1 domain profile. IPR001002
SUPERFAMILY 29 68 40 SSF57016 none none IPR001002
Gene3D 28 70 43 G3DSA:3.30.60.10 none none IPR001002
PANTHER 27 277 251 PTHR22595 none none none
SMART 31 62 32 SM00270 none Chitin binding domain IPR001002
PANTHER 27 277 251 PTHR22595:SF37 none none none
Phobius 1 29 29 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 80 277 198 PF00182 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" Chitinase class I IPR000726
Pfam 28 62 35 PF00187 none Chitin recognition protein IPR001002
Phobius 22 29 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
ProSitePatterns 34 53 20 PS00026 none Chitin recognition or binding domain signature. IPR018371
Gene3D 155 206 52 G3DSA:3.30.20.10 none none none

2 Localization

Analysis Start End Length
SignalP_EUK 1 29 28
SignalP_GRAM_POSITIVE 1 35 34

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 29   Secretory pathway 1 0.920 0.031 NON-PLANT 29