Protein : Qrob_P0038120.2 Q. robur
Protein Identifier  ? Qrob_P0038120.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=4) PTHR13301//PTHR13301:SF28 - X-BOX TRANSCRIPTION FACTOR-RELATED // SUBFAMILY NOT NAMED (PTHR13301:SF28) Code Enzyme  EC:2.4.1.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1122  
Kegg Orthology  K10999
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0030244 cellulose biosynthetic process The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
GO:0016760 cellulose synthase (UDP-forming) activity Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1).

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103330444 1 1121 + 1121 Gaps:39 100.00 1082 94.92 0.0 cellulose synthase A catalytic subunit 3 [UDP-forming]
blastp_kegg lcl|pper:PRUPE_ppa000593mg 1 1121 + 1121 Gaps:39 100.00 1082 94.73 0.0 hypothetical protein
blastp_kegg lcl|fve:101296424 1 1121 + 1121 Gaps:38 100.00 1083 93.91 0.0 cellulose synthase A catalytic subunit 3 [UDP-forming]-like
blastp_kegg lcl|pxb:103954859 1 1121 + 1121 Gaps:40 100.00 1081 92.60 0.0 cellulose synthase A catalytic subunit 3 [UDP-forming]
blastp_kegg lcl|pxb:103945881 1 1121 + 1121 Gaps:39 100.00 1082 93.53 0.0 cellulose synthase A catalytic subunit 3 [UDP-forming]-like
blastp_kegg lcl|mdm:103438406 1 1121 + 1121 Gaps:39 100.00 1082 93.62 0.0 cellulose synthase A catalytic subunit 3 [UDP-forming]
blastp_kegg lcl|rcu:RCOM_0493240 1 1121 + 1121 Gaps:42 100.00 1085 92.44 0.0 Cellulose synthase A catalytic subunit 6 [UDP-forming] putative (EC:2.4.1.12)
blastp_kegg lcl|cam:101499537 1 1121 + 1121 Gaps:44 100.00 1077 92.94 0.0 cellulose synthase A catalytic subunit 3 [UDP-forming]-like
blastp_kegg lcl|pvu:PHAVU_005G022100g 1 1121 + 1121 Gaps:47 99.91 1075 93.58 0.0 hypothetical protein
blastp_kegg lcl|sly:101246863 1 1121 + 1121 Gaps:38 100.00 1083 91.87 0.0 cellulose synthase A catalytic subunit 3 [UDP-forming]-like
blastp_pdb 1weo_A 3 78 + 76 none 81.72 93 60.53 3e-26 mol:protein length:93 cellulose synthase catalytic subunit (IRX3)
blastp_uniprot_sprot sp|Q941L0|CESA3_ARATH 1 1121 + 1121 Gaps:56 100.00 1065 88.17 0.0 Cellulose synthase A catalytic subunit 3 [UDP-forming] OS Arabidopsis thaliana GN CESA3 PE 1 SV 2
blastp_uniprot_sprot sp|Q84ZN6|CESA8_ORYSJ 8 1121 + 1114 Gaps:69 99.44 1081 85.12 0.0 Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS Oryza sativa subsp. japonica GN CESA8 PE 2 SV 1
blastp_uniprot_sprot sp|Q84M43|CESA2_ORYSJ 8 1121 + 1114 Gaps:53 99.81 1073 84.41 0.0 Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS Oryza sativa subsp. japonica GN CESA2 PE 2 SV 1
blastp_uniprot_sprot sp|A2XN66|CESA2_ORYSI 8 1121 + 1114 Gaps:53 99.81 1073 84.41 0.0 Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS Oryza sativa subsp. indica GN CESA2 PE 3 SV 1
blastp_uniprot_sprot sp|Q6AT26|CESA1_ORYSJ 9 1121 + 1113 Gaps:68 97.30 1076 73.16 0.0 Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS Oryza sativa subsp. japonica GN CESA1 PE 2 SV 1
blastp_uniprot_sprot sp|A2Y0X2|CESA1_ORYSI 9 1121 + 1113 Gaps:68 97.30 1076 73.16 0.0 Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS Oryza sativa subsp. indica GN CESA1 PE 3 SV 1
blastp_uniprot_sprot sp|O48946|CESA1_ARATH 1 1106 + 1106 Gaps:68 96.76 1081 71.99 0.0 Cellulose synthase A catalytic subunit 1 [UDP-forming] OS Arabidopsis thaliana GN CESA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SKJ5|CESAA_ARATH 4 1107 + 1104 Gaps:75 97.37 1065 70.68 0.0 Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS Arabidopsis thaliana GN CESA10 PE 2 SV 1
blastp_uniprot_sprot sp|Q851L8|CESA5_ORYSJ 1 1121 + 1121 Gaps:69 98.17 1092 69.87 0.0 Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS Oryza sativa subsp. japonica GN CESA5 PE 2 SV 1
blastp_uniprot_sprot sp|A2XNT2|CESA5_ORYSI 1 1121 + 1121 Gaps:69 98.17 1092 69.87 0.0 Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS Oryza sativa subsp. indica GN CESA5 PE 3 SV 1
rpsblast_cdd gnl|CDD|178244 1 1121 + 1121 Gaps:44 100.00 1079 94.07 0.0 PLN02638 PLN02638 cellulose synthase A (UDP-forming) catalytic subunit.
rpsblast_cdd gnl|CDD|178022 4 1121 + 1118 Gaps:65 97.97 1085 74.69 0.0 PLN02400 PLN02400 cellulose synthase.
rpsblast_cdd gnl|CDD|178055 10 1121 + 1112 Gaps:59 97.35 1094 69.67 0.0 PLN02436 PLN02436 cellulose synthase A.
rpsblast_cdd gnl|CDD|177841 5 1121 + 1117 Gaps:110 97.98 1040 74.39 0.0 PLN02189 PLN02189 cellulose synthase.
rpsblast_cdd gnl|CDD|178503 18 1121 + 1104 Gaps:44 93.68 1044 73.11 0.0 PLN02915 PLN02915 cellulose synthase A [UDP-forming] catalytic subunit.
rpsblast_cdd gnl|CDD|146277 393 1114 + 722 Gaps:11 99.58 716 83.45 0.0 pfam03552 Cellulose_synt Cellulose synthase. Cellulose an aggregate of unbranched polymers of beta-1 4-linked glucose residues is the major component of wood and thus paper and is synthesised by plants most algae some bacteria and fungi and even some animals. The genes that synthesise cellulose in higher plants differ greatly from the well-characterized genes found in Acetobacter and Agrobacterium sp. More correctly designated as 'cellulose synthase catalytic subunits' plant cellulose synthase (CesA) proteins are integral membrane proteins approximately 1 000 amino acids in length. There are a number of highly conserved residues including several motifs shown to be necessary for processive glycosyltransferase activity.
rpsblast_cdd gnl|CDD|177846 16 1121 + 1106 Gaps:24 93.86 977 71.86 0.0 PLN02195 PLN02195 cellulose synthase A.
rpsblast_cdd gnl|CDD|177890 291 1104 + 814 Gaps:120 75.77 1135 52.44 0.0 PLN02248 PLN02248 cellulose synthase-like protein.
rpsblast_cdd gnl|CDD|177842 298 1100 + 803 Gaps:128 98.81 756 36.55 1e-121 PLN02190 PLN02190 cellulose synthase-like protein.

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1012 1040 29 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 313 332 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 119 119 PTHR13301:SF28 none none none
Phobius 1082 1102 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 11 85 75 PF14569 "KEGG:00500+2.4.1.12","MetaCyc:PWY-1001","UniPathway:UPA00695" Zinc-binding RING-finger IPR027934
Phobius 920 930 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 4 87 84 G3DSA:3.30.40.10 none none IPR013083
Pfam 393 1114 722 PF03552 none Cellulose synthase IPR005150
PANTHER 231 253 23 PTHR13301:SF28 none none none
PANTHER 283 1115 833 PTHR13301:SF28 none none none
Phobius 333 338 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 6 87 82 SSF57850 none none none
PANTHER 1 119 119 PTHR13301 none none none
PANTHER 231 253 23 PTHR13301 none none none
PANTHER 283 1115 833 PTHR13301 none none none
Phobius 1041 1051 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 992 1011 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 899 919 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1071 1081 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 969 991 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1052 1070 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 950 968 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 360 898 539 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 339 359 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 312 312 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 407 457 51 SSF53448 none none IPR029044
SUPERFAMILY 561 682 122 SSF53448 none none IPR029044
SUPERFAMILY 799 931 133 SSF53448 none none IPR029044
Phobius 1103 1121 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 931 949 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

8 Localization

Analysis Start End Length
TMHMM 1016 1038 22
TMHMM 897 919 22
TMHMM 1083 1102 19
TMHMM 968 990 22
TMHMM 316 333 17
TMHMM 340 359 19
TMHMM 1048 1070 22
TMHMM 931 953 22

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting