Protein : Qrob_P0031960.2 Q. robur
Protein Identifier  ? Qrob_P0031960.2 Organism . Name  Quercus robur
Score  15.2 Score Type  egn
Protein Description  (M=8) K01184 - polygalacturonase [EC:3.2.1.15] Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 391  
Kegg Orthology  K01184
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0017s03950g 1 390 + 390 none 100.00 390 78.72 0.0 polygalacturonase family protein
blastp_kegg lcl|pop:POPTR_0007s00390g 1 390 + 390 none 100.00 390 74.87 0.0 POPTRDRAFT_562085 hypothetical protein
blastp_kegg lcl|fve:101296519 9 390 + 382 none 96.46 396 76.18 0.0 polygalacturonase-like
blastp_kegg lcl|tcc:TCM_021546 12 390 + 379 Gaps:3 97.45 392 79.32 0.0 Pectin lyase-like superfamily protein
blastp_kegg lcl|pop:POPTR_0017s03940g 1 390 + 390 none 100.00 390 77.18 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1268290 4 390 + 387 Gaps:5 98.45 388 75.13 0.0 Polygalacturonase precursor putative (EC:3.2.1.67)
blastp_kegg lcl|pper:PRUPE_ppa016502mg 27 390 + 364 Gaps:4 91.32 403 80.98 0.0 hypothetical protein
blastp_kegg lcl|pmum:103341382 29 390 + 362 Gaps:4 90.82 403 81.42 0.0 polygalacturonase
blastp_kegg lcl|rcu:RCOM_1267980 10 390 + 381 Gaps:5 96.91 388 79.26 0.0 Polygalacturonase precursor putative (EC:3.2.1.67)
blastp_kegg lcl|cit:102620696 11 390 + 380 Gaps:2 96.94 392 75.53 0.0 polygalacturonase-like
blastp_pdb 2iq7_G 120 376 + 257 Gaps:26 75.22 339 31.76 2e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_F 120 376 + 257 Gaps:26 75.22 339 31.76 2e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_E 120 376 + 257 Gaps:26 75.22 339 31.76 2e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_D 120 376 + 257 Gaps:26 75.22 339 31.76 2e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_C 120 376 + 257 Gaps:26 75.22 339 31.76 2e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_B 120 376 + 257 Gaps:26 75.22 339 31.76 2e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_A 120 376 + 257 Gaps:26 75.22 339 31.76 2e-20 mol:protein length:339 endopolygalacturonase
blastp_pdb 1ib4_B 120 376 + 257 Gaps:22 74.63 339 29.64 2e-19 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ib4_A 120 376 + 257 Gaps:22 74.63 339 29.64 2e-19 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ia5_A 120 376 + 257 Gaps:22 74.63 339 29.64 2e-19 mol:protein length:339 POLYGALACTURONASE
blastp_uniprot_sprot sp|P48979|PGLR_PRUPE 3 390 + 388 Gaps:3 98.98 393 57.84 2e-160 Polygalacturonase OS Prunus persica PE 2 SV 1
blastp_uniprot_sprot sp|O22818|PGLR6_ARATH 15 390 + 376 Gaps:4 93.33 405 50.79 2e-129 Probable polygalacturonase At2g43860 OS Arabidopsis thaliana GN At2g43860 PE 2 SV 1
blastp_uniprot_sprot sp|Q39786|PGLR_GOSHI 9 389 + 381 Gaps:14 94.10 407 43.34 9e-100 Polygalacturonase OS Gossypium hirsutum GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q39766|PGLR_GOSBA 9 389 + 381 Gaps:14 94.10 407 42.82 3e-98 Polygalacturonase OS Gossypium barbadense GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q6H9K0|PGLR2_PLAAC 20 386 + 367 Gaps:9 98.14 377 41.89 2e-92 Exopolygalacturonase (Fragment) OS Platanus acerifolia GN plaa2 PE 1 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 29 387 + 359 Gaps:13 83.53 431 43.89 6e-92 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 23 390 + 368 Gaps:12 84.68 444 42.29 1e-90 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 21 386 + 366 Gaps:16 84.74 439 43.01 3e-89 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2
blastp_uniprot_sprot sp|Q05967|PGLR_TOBAC 4 389 + 386 Gaps:8 97.47 396 39.64 8e-89 Polygalacturonase OS Nicotiana tabacum GN PG1 PE 2 SV 1
blastp_uniprot_sprot sp|P35339|PGLR3_MAIZE 1 390 + 390 Gaps:20 100.00 410 36.83 2e-88 Exopolygalacturonase OS Zea mays GN PG2C PE 2 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 1 390 390 PTHR31375:SF2 none none none
SUPERFAMILY 10 390 381 SSF51126 none none IPR011050
Phobius 26 390 365 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 10 389 380 G3DSA:2.160.20.10 none none IPR012334
PANTHER 1 390 390 PTHR31375 none none none
Phobius 21 25 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 54 377 324 PF00295 none Glycosyl hydrolases family 28 IPR000743
SMART 319 359 41 SM00710 none Parallel beta-helix repeats IPR006626
SMART 285 306 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 255 276 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 175 201 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 224 245 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 202 223 22 SM00710 none Parallel beta-helix repeats IPR006626
Phobius 9 20 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
ProSitePatterns 232 245 14 PS00502 none Polygalacturonase active site. IPR000743
Phobius 1 8 8 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

4 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 25 24
SignalP_EUK 1 25 24
TMHMM 9 31 22
SignalP_GRAM_POSITIVE 1 25 24

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 2 0.939 0.288 NON-PLANT 25