Protein : Qrob_P0031950.2 Q. robur
Protein Identifier  ? Qrob_P0031950.2 Organism . Name  Quercus robur
Score  88.2 Score Type  egn
Protein Description  (M=8) K01184 - polygalacturonase [EC:3.2.1.15] Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 389  
Kegg Orthology  K01184
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101296237 6 386 + 381 Gaps:11 99.49 394 66.58 0.0 polygalacturonase-like
blastp_kegg lcl|pmum:103341336 1 386 + 386 Gaps:9 100.00 395 66.33 0.0 polygalacturonase
blastp_kegg lcl|rcu:RCOM_1267870 3 386 + 384 Gaps:5 99.74 390 62.98 4e-178 Polygalacturonase precursor putative (EC:3.2.1.67)
blastp_kegg lcl|rcu:RCOM_1267860 20 386 + 367 Gaps:1 94.36 390 66.30 5e-178 Polygalacturonase precursor putative (EC:3.2.1.67)
blastp_kegg lcl|pper:PRUPE_ppa020072mg 1 386 + 386 Gaps:9 100.00 395 65.57 9e-178 hypothetical protein
blastp_kegg lcl|pop:POPTR_0017s03930g 7 386 + 380 Gaps:2 97.70 391 65.71 5e-177 hypothetical protein
blastp_kegg lcl|cit:102620696 1 388 + 388 Gaps:5 99.74 392 61.38 2e-174 polygalacturonase-like
blastp_kegg lcl|mdm:103456330 1 386 + 386 Gaps:11 100.00 397 59.95 6e-173 polygalacturonase
blastp_kegg lcl|cit:102621263 6 386 + 381 Gaps:10 98.98 393 63.75 2e-172 polygalacturonase-like
blastp_kegg lcl|pxb:103935607 1 386 + 386 Gaps:11 100.00 397 59.95 5e-172 polygalacturonase
blastp_pdb 1czf_B 50 371 + 322 Gaps:33 85.91 362 28.94 1e-22 mol:protein length:362 POLYGALACTURONASE II
blastp_pdb 1czf_A 50 371 + 322 Gaps:33 85.91 362 28.94 1e-22 mol:protein length:362 POLYGALACTURONASE II
blastp_pdb 1nhc_F 114 364 + 251 Gaps:31 74.40 336 31.60 6e-21 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 114 364 + 251 Gaps:31 74.40 336 31.60 6e-21 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 114 364 + 251 Gaps:31 74.40 336 31.60 6e-21 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 114 364 + 251 Gaps:31 74.40 336 31.60 6e-21 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 114 364 + 251 Gaps:31 74.40 336 31.60 6e-21 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_A 114 364 + 251 Gaps:31 74.40 336 31.60 6e-21 mol:protein length:336 Polygalacturonase I
blastp_pdb 1bhe_A 148 359 + 212 Gaps:24 54.26 376 35.29 3e-19 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1hg8_A 109 369 + 261 Gaps:47 77.36 349 32.59 3e-17 mol:protein length:349 ENDOPOLYGALACTURONASE
blastp_uniprot_sprot sp|P48979|PGLR_PRUPE 1 386 + 386 Gaps:7 100.00 393 56.23 5e-154 Polygalacturonase OS Prunus persica PE 2 SV 1
blastp_uniprot_sprot sp|O22818|PGLR6_ARATH 21 388 + 368 Gaps:4 91.36 405 50.81 7e-117 Probable polygalacturonase At2g43860 OS Arabidopsis thaliana GN At2g43860 PE 2 SV 1
blastp_uniprot_sprot sp|Q39786|PGLR_GOSHI 5 385 + 381 Gaps:10 94.59 407 43.64 9e-100 Polygalacturonase OS Gossypium hirsutum GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q39766|PGLR_GOSBA 5 385 + 381 Gaps:10 94.59 407 43.64 5e-99 Polygalacturonase OS Gossypium barbadense GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 25 383 + 359 Gaps:13 83.53 431 44.72 1e-92 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|P35336|PGLR_ACTDE 24 382 + 359 Gaps:8 77.73 467 44.08 2e-90 Polygalacturonase OS Actinidia deliciosa PE 2 SV 1
blastp_uniprot_sprot sp|Q8RY29|ADPG2_ARATH 25 383 + 359 Gaps:19 83.14 433 45.56 1e-89 Polygalacturonase ADPG2 OS Arabidopsis thaliana GN ADPG2 PE 2 SV 2
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 19 386 + 368 Gaps:10 84.68 444 42.55 2e-89 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|P24548|PGLR_OENOR 37 385 + 349 Gaps:7 97.79 362 42.09 6e-89 Exopolygalacturonase (Fragment) OS Oenothera organensis PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 17 382 + 366 Gaps:16 84.74 439 42.74 7e-89 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 21 21 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 17 21 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 5 387 383 PTHR31375:SF2 none none none
Gene3D 9 387 379 G3DSA:2.160.20.10 none none IPR012334
Phobius 1 4 4 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
ProSitePatterns 228 241 14 PS00502 none Polygalacturonase active site. IPR000743
Pfam 50 373 324 PF00295 none Glycosyl hydrolases family 28 IPR000743
Phobius 5 16 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 22 388 367 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 5 387 383 PTHR31375 none none none
SUPERFAMILY 10 386 377 SSF51126 none none IPR011050
SMART 221 241 21 SM00710 none Parallel beta-helix repeats IPR006626
SMART 281 302 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 251 272 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 198 219 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 171 197 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 348 383 36 SM00710 none Parallel beta-helix repeats IPR006626

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 21 20
SignalP_EUK 1 21 20
SignalP_GRAM_NEGATIVE 1 21 20

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Secretory pathway 1 0.958 0.045 NON-PLANT 21