Protein : Qrob_P0031890.2 Q. robur
Protein Identifier  ? Qrob_P0031890.2 Organism . Name  Quercus robur
Score  17.0 Score Type  egn
Protein Description  (M=8) K01184 - polygalacturonase [EC:3.2.1.15] Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 393  
Kegg Orthology  K01184
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103456333 6 392 + 387 Gaps:3 97.49 398 78.35 0.0 polygalacturonase-like
blastp_kegg lcl|pxb:103935606 6 392 + 387 Gaps:3 97.49 398 78.09 0.0 polygalacturonase-like
blastp_kegg lcl|pmum:103326790 8 392 + 385 Gaps:2 97.70 392 78.85 0.0 polygalacturonase-like
blastp_kegg lcl|fve:101302685 1 392 + 392 Gaps:1 100.00 391 77.49 0.0 polygalacturonase-like
blastp_kegg lcl|pper:PRUPE_ppa025787mg 8 392 + 385 Gaps:2 97.70 392 78.33 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa007271mg 22 392 + 371 Gaps:1 98.67 375 79.19 0.0 hypothetical protein
blastp_kegg lcl|pmum:103326791 7 392 + 386 Gaps:3 97.96 393 75.84 0.0 polygalacturonase
blastp_kegg lcl|pper:PRUPE_ppa006857mg 7 392 + 386 Gaps:3 97.96 393 75.58 0.0 hypothetical protein
blastp_kegg lcl|pmum:103341334 22 392 + 371 Gaps:1 93.91 394 78.92 0.0 polygalacturonase-like
blastp_kegg lcl|pper:PRUPE_ppa006839mg 7 392 + 386 Gaps:3 97.96 393 75.58 0.0 hypothetical protein
blastp_pdb 1bhe_A 148 364 + 217 Gaps:20 55.59 376 33.49 2e-18 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1rmg_A 26 381 + 356 Gaps:29 79.86 422 27.00 1e-16 mol:protein length:422 RHAMNOGALACTURONASE A
blastp_pdb 1hg8_A 120 364 + 245 Gaps:33 73.35 349 29.69 6e-14 mol:protein length:349 ENDOPOLYGALACTURONASE
blastp_pdb 1ib4_B 120 336 + 217 Gaps:12 63.42 339 28.84 9e-14 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ib4_A 120 336 + 217 Gaps:12 63.42 339 28.84 9e-14 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ia5_A 120 336 + 217 Gaps:12 63.42 339 28.84 9e-14 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1czf_B 112 364 + 253 Gaps:26 69.34 362 30.68 2e-13 mol:protein length:362 POLYGALACTURONASE II
blastp_pdb 1czf_A 112 364 + 253 Gaps:26 69.34 362 30.68 2e-13 mol:protein length:362 POLYGALACTURONASE II
blastp_pdb 1nhc_F 121 364 + 244 Gaps:17 72.32 336 28.40 2e-12 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 121 364 + 244 Gaps:17 72.32 336 28.40 2e-12 mol:protein length:336 Polygalacturonase I
blastp_uniprot_sprot sp|P48979|PGLR_PRUPE 7 392 + 386 Gaps:3 97.96 393 74.81 0.0 Polygalacturonase OS Prunus persica PE 2 SV 1
blastp_uniprot_sprot sp|O22818|PGLR6_ARATH 13 392 + 380 Gaps:4 93.83 405 55.00 4e-143 Probable polygalacturonase At2g43860 OS Arabidopsis thaliana GN At2g43860 PE 2 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 1 388 + 388 Gaps:17 89.33 431 43.38 2e-94 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q39786|PGLR_GOSHI 9 391 + 383 Gaps:14 94.59 407 39.74 4e-93 Polygalacturonase OS Gossypium hirsutum GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q39766|PGLR_GOSBA 9 391 + 383 Gaps:14 94.59 407 39.48 5e-92 Polygalacturonase OS Gossypium barbadense GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q6H9K0|PGLR2_PLAAC 20 388 + 369 Gaps:9 98.14 377 42.43 1e-91 Exopolygalacturonase (Fragment) OS Platanus acerifolia GN plaa2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 12 388 + 377 Gaps:14 86.79 439 43.31 2e-91 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2
blastp_uniprot_sprot sp|P35336|PGLR_ACTDE 20 388 + 369 Gaps:8 79.44 467 43.40 8e-91 Polygalacturonase OS Actinidia deliciosa PE 2 SV 1
blastp_uniprot_sprot sp|Q05967|PGLR_TOBAC 7 391 + 385 Gaps:10 95.71 396 41.95 1e-88 Polygalacturonase OS Nicotiana tabacum GN PG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RY29|ADPG2_ARATH 13 388 + 376 Gaps:15 86.61 433 43.20 2e-88 Polygalacturonase ADPG2 OS Arabidopsis thaliana GN ADPG2 PE 2 SV 2

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 22 22 SIGNAL_PEPTIDE none Signal peptide region none
SMART 176 202 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 286 307 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 256 277 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 226 246 21 SM00710 none Parallel beta-helix repeats IPR006626
SMART 114 135 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 203 224 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 353 380 28 SM00710 none Parallel beta-helix repeats IPR006626
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Pfam 54 378 325 PF00295 none Glycosyl hydrolases family 28 IPR000743
PANTHER 8 392 385 PTHR31375:SF2 none none none
Phobius 15 22 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 8 392 385 PTHR31375 none none none
Gene3D 8 391 384 G3DSA:2.160.20.10 none none IPR012334
Phobius 23 392 370 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 233 246 14 PS00502 none Polygalacturonase active site. IPR000743
Phobius 4 14 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 15 392 378 SSF51126 none none IPR011050

3 Localization

Analysis Start End Length
TMHMM 7 29 22
SignalP_GRAM_POSITIVE 1 22 21
SignalP_EUK 1 22 21

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 22   Secretory pathway 1 0.993 0.014 NON-PLANT 22