Protein : Qrob_P0025340.2 Q. robur
Protein Identifier  ? Qrob_P0025340.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=8) K01184 - polygalacturonase [EC:3.2.1.15] Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 393  
Kegg Orthology  K01184
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103456333 1 392 + 392 Gaps:4 98.49 398 66.58 0.0 polygalacturonase-like
blastp_kegg lcl|pmum:103326790 5 392 + 388 Gaps:5 98.72 392 68.22 0.0 polygalacturonase-like
blastp_kegg lcl|pxb:103935606 1 392 + 392 Gaps:4 98.49 398 66.07 0.0 polygalacturonase-like
blastp_kegg lcl|pmum:103326791 11 392 + 382 Gaps:6 97.71 393 67.19 0.0 polygalacturonase
blastp_kegg lcl|pper:PRUPE_ppa025787mg 5 392 + 388 Gaps:5 98.72 392 67.70 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa006857mg 11 392 + 382 Gaps:6 97.71 393 66.41 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1267820 11 392 + 382 Gaps:4 97.20 393 66.75 0.0 Polygalacturonase precursor putative (EC:3.2.1.67)
blastp_kegg lcl|pper:PRUPE_ppa006839mg 11 392 + 382 Gaps:6 97.71 393 66.41 0.0 hypothetical protein
blastp_kegg lcl|fve:101302685 9 392 + 384 Gaps:4 98.21 391 65.89 0.0 polygalacturonase-like
blastp_kegg lcl|cam:101509102 4 392 + 389 Gaps:6 98.49 397 64.19 5e-180 polygalacturonase-like
blastp_pdb 1bhe_A 119 364 + 246 Gaps:34 66.49 376 32.00 8e-21 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1rmg_A 29 363 + 335 Gaps:36 75.12 422 26.18 4e-16 mol:protein length:422 RHAMNOGALACTURONASE A
blastp_pdb 1hg8_A 195 380 + 186 Gaps:6 52.15 349 31.32 2e-14 mol:protein length:349 ENDOPOLYGALACTURONASE
blastp_pdb 1ib4_B 91 371 + 281 Gaps:25 83.78 339 27.82 2e-14 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ib4_A 91 371 + 281 Gaps:25 83.78 339 27.82 2e-14 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ia5_A 91 371 + 281 Gaps:25 83.78 339 27.82 2e-14 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 2iq7_G 91 339 + 249 Gaps:17 74.93 339 29.53 3e-14 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_F 91 339 + 249 Gaps:17 74.93 339 29.53 3e-14 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_E 91 339 + 249 Gaps:17 74.93 339 29.53 3e-14 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_D 91 339 + 249 Gaps:17 74.93 339 29.53 3e-14 mol:protein length:339 endopolygalacturonase
blastp_uniprot_sprot sp|P48979|PGLR_PRUPE 11 392 + 382 Gaps:6 97.71 393 65.36 0.0 Polygalacturonase OS Prunus persica PE 2 SV 1
blastp_uniprot_sprot sp|O22818|PGLR6_ARATH 14 392 + 379 Gaps:5 93.83 405 52.11 4e-137 Probable polygalacturonase At2g43860 OS Arabidopsis thaliana GN At2g43860 PE 2 SV 1
blastp_uniprot_sprot sp|Q6H9K0|PGLR2_PLAAC 21 391 + 371 Gaps:9 99.20 377 45.72 6e-102 Exopolygalacturonase (Fragment) OS Platanus acerifolia GN plaa2 PE 1 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 18 387 + 370 Gaps:16 87.24 431 40.96 3e-91 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q39766|PGLR_GOSBA 6 365 + 360 Gaps:7 89.19 407 39.94 3e-89 Polygalacturonase OS Gossypium barbadense GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q05967|PGLR_TOBAC 1 389 + 389 Gaps:16 97.22 396 41.82 6e-89 Polygalacturonase OS Nicotiana tabacum GN PG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q39786|PGLR_GOSHI 6 387 + 382 Gaps:8 94.84 407 38.60 1e-88 Polygalacturonase OS Gossypium hirsutum GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|P24548|PGLR_OENOR 42 389 + 348 Gaps:7 97.51 362 41.08 2e-88 Exopolygalacturonase (Fragment) OS Oenothera organensis PE 2 SV 1
blastp_uniprot_sprot sp|Q8RY29|ADPG2_ARATH 14 390 + 377 Gaps:11 87.30 433 41.53 1e-87 Polygalacturonase ADPG2 OS Arabidopsis thaliana GN ADPG2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 23 387 + 365 Gaps:16 84.51 439 42.59 2e-84 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 24 392 369 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 10 390 381 G3DSA:2.160.20.10 none none IPR012334
SMART 227 247 21 SM00710 none Parallel beta-helix repeats IPR006626
SMART 287 308 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 257 278 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 114 161 48 SM00710 none Parallel beta-helix repeats IPR006626
SMART 320 360 41 SM00710 none Parallel beta-helix repeats IPR006626
SMART 204 225 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 177 203 27 SM00710 none Parallel beta-helix repeats IPR006626
Pfam 55 380 326 PF00295 none Glycosyl hydrolases family 28 IPR000743
ProSitePatterns 234 247 14 PS00502 none Polygalacturonase active site. IPR000743
Phobius 1 23 23 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 7 392 386 PTHR31375:SF2 none none none
Phobius 3 14 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 7 392 386 PTHR31375 none none none
Phobius 15 23 9 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SUPERFAMILY 12 391 380 SSF51126 none none IPR011050

4 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 23 22
SignalP_GRAM_POSITIVE 1 23 22
SignalP_EUK 1 23 22
TMHMM 5 27 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 23   Secretory pathway 1 0.987 0.012 NON-PLANT 23