Protein : Qrob_P0025300.2 Q. robur
Protein Identifier  ? Qrob_P0025300.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=8) K01184 - polygalacturonase [EC:3.2.1.15] Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 393  
Kegg Orthology  K01184
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103456333 1 392 + 392 Gaps:4 98.49 398 67.35 0.0 polygalacturonase-like
blastp_kegg lcl|pxb:103935606 1 392 + 392 Gaps:4 98.49 398 66.84 0.0 polygalacturonase-like
blastp_kegg lcl|pmum:103326791 7 392 + 386 Gaps:6 98.73 393 68.04 0.0 polygalacturonase
blastp_kegg lcl|pper:PRUPE_ppa025787mg 1 392 + 392 Gaps:6 100.00 392 68.11 0.0 hypothetical protein
blastp_kegg lcl|fve:101302685 7 392 + 386 Gaps:4 98.72 391 67.10 0.0 polygalacturonase-like
blastp_kegg lcl|pmum:103326790 1 392 + 392 Gaps:6 100.00 392 68.11 0.0 polygalacturonase-like
blastp_kegg lcl|pper:PRUPE_ppa006857mg 7 392 + 386 Gaps:6 98.73 393 67.27 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa006839mg 7 392 + 386 Gaps:6 98.73 393 67.27 0.0 hypothetical protein
blastp_kegg lcl|cit:102617652 11 387 + 377 Gaps:3 95.70 395 67.72 0.0 polygalacturonase-like
blastp_kegg lcl|pmum:103326925 5 392 + 388 Gaps:5 99.23 392 66.32 0.0 polygalacturonase-like
blastp_pdb 1bhe_A 119 364 + 246 Gaps:32 66.49 376 33.60 1e-20 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1ib4_B 91 336 + 246 Gaps:19 73.45 339 28.92 9e-15 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ib4_A 91 336 + 246 Gaps:19 73.45 339 28.92 9e-15 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ia5_A 91 336 + 246 Gaps:19 73.45 339 28.92 9e-15 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 2iq7_G 91 350 + 260 Gaps:24 78.47 339 30.45 1e-14 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_F 91 350 + 260 Gaps:24 78.47 339 30.45 1e-14 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_E 91 350 + 260 Gaps:24 78.47 339 30.45 1e-14 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_D 91 350 + 260 Gaps:24 78.47 339 30.45 1e-14 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_C 91 350 + 260 Gaps:24 78.47 339 30.45 1e-14 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_B 91 350 + 260 Gaps:24 78.47 339 30.45 1e-14 mol:protein length:339 endopolygalacturonase
blastp_uniprot_sprot sp|P48979|PGLR_PRUPE 7 392 + 386 Gaps:6 98.73 393 66.24 0.0 Polygalacturonase OS Prunus persica PE 2 SV 1
blastp_uniprot_sprot sp|O22818|PGLR6_ARATH 14 392 + 379 Gaps:5 93.83 405 53.42 3e-138 Probable polygalacturonase At2g43860 OS Arabidopsis thaliana GN At2g43860 PE 2 SV 1
blastp_uniprot_sprot sp|Q6H9K0|PGLR2_PLAAC 21 391 + 371 Gaps:9 99.20 377 46.26 2e-102 Exopolygalacturonase (Fragment) OS Platanus acerifolia GN plaa2 PE 1 SV 1
blastp_uniprot_sprot sp|Q05967|PGLR_TOBAC 1 389 + 389 Gaps:10 97.22 396 42.86 4e-92 Polygalacturonase OS Nicotiana tabacum GN PG1 PE 2 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 10 387 + 378 Gaps:13 87.47 431 41.91 4e-91 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q39766|PGLR_GOSBA 10 387 + 378 Gaps:8 93.86 407 38.48 2e-88 Polygalacturonase OS Gossypium barbadense GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q39786|PGLR_GOSHI 10 387 + 378 Gaps:8 93.86 407 38.48 4e-88 Polygalacturonase OS Gossypium hirsutum GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|P24548|PGLR_OENOR 42 389 + 348 Gaps:7 97.51 362 41.93 1e-87 Exopolygalacturonase (Fragment) OS Oenothera organensis PE 2 SV 1
blastp_uniprot_sprot sp|P49062|PGLR1_ARATH 25 365 + 341 Gaps:11 79.62 422 41.96 3e-87 Exopolygalacturonase clone GBGE184 OS Arabidopsis thaliana GN PGA3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RY29|ADPG2_ARATH 11 390 + 380 Gaps:11 87.99 433 40.94 4e-86 Polygalacturonase ADPG2 OS Arabidopsis thaliana GN ADPG2 PE 2 SV 2

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 234 247 14 PS00502 none Polygalacturonase active site. IPR000743
SUPERFAMILY 12 391 380 SSF51126 none none IPR011050
SMART 204 225 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 320 347 28 SM00710 none Parallel beta-helix repeats IPR006626
SMART 177 203 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 114 136 23 SM00710 none Parallel beta-helix repeats IPR006626
SMART 287 308 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 257 278 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 227 247 21 SM00710 none Parallel beta-helix repeats IPR006626
Phobius 1 23 23 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 15 23 9 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 3 14 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 11 390 380 G3DSA:2.160.20.10 none none IPR012334
PANTHER 9 392 384 PTHR31375:SF2 none none none
Phobius 24 392 369 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 9 392 384 PTHR31375 none none none
Pfam 55 377 323 PF00295 none Glycosyl hydrolases family 28 IPR000743

4 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 23 22
TMHMM 5 27 22
SignalP_GRAM_NEGATIVE 1 23 22
SignalP_EUK 1 23 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 23   Secretory pathway 1 0.988 0.014 NON-PLANT 23