Protein : Qrob_P0006080.2 Q. robur
Protein Identifier  ? Qrob_P0006080.2 Organism . Name  Quercus robur
Score  57.3 Score Type  egn
Protein Description  (M=162) PF01535//PF13041 - PPR repeat // PPR repeat family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 760  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103321674 1 749 + 749 Gaps:29 96.77 804 66.71 0.0 putative pentatricopeptide repeat-containing protein At1g69350 mitochondrial
blastp_kegg lcl|mdm:103416499 1 751 + 751 Gaps:29 100.00 780 65.51 0.0 putative pentatricopeptide repeat-containing protein At1g69350 mitochondrial
blastp_kegg lcl|mdm:103402847 1 751 + 751 Gaps:29 100.00 780 65.51 0.0 putative pentatricopeptide repeat-containing protein At1g69350 mitochondrial
blastp_kegg lcl|vvi:100260996 1 757 + 757 Gaps:30 89.94 875 64.04 0.0 putative pentatricopeptide repeat-containing protein At1g69350 mitochondrial-like
blastp_kegg lcl|tcc:TCM_011603 2 751 + 750 Gaps:30 93.98 830 64.23 0.0 Pentatricopeptide repeat-containing protein putative
blastp_kegg lcl|rcu:RCOM_1621780 1 756 + 756 Gaps:30 98.00 800 62.24 0.0 pentatricopeptide repeat-containing protein putative
blastp_kegg lcl|cic:CICLE_v10033549mg 1 716 + 716 Gaps:29 100.00 745 63.36 0.0 hypothetical protein
blastp_kegg lcl|gmx:100800182 1 757 + 757 Gaps:35 95.41 828 60.00 0.0 putative pentatricopeptide repeat-containing protein At1g69350 mitochondrial-like
blastp_kegg lcl|cam:101494114 2 757 + 756 Gaps:34 97.89 805 60.79 0.0 putative pentatricopeptide repeat-containing protein At1g69350 mitochondrial-like
blastp_kegg lcl|mtr:MTR_5g043450 1 757 + 757 Gaps:33 95.41 828 59.87 0.0 hypothetical protein
blastp_uniprot_sprot sp|Q9C507|PP111_ARATH 1 752 + 752 Gaps:32 99.36 787 56.14 0.0 Putative pentatricopeptide repeat-containing protein At1g69350 mitochondrial OS Arabidopsis thaliana GN PCMP-E66 PE 3 SV 1
blastp_uniprot_sprot sp|Q9STE1|PP333_ARATH 5 745 + 741 Gaps:48 90.43 857 36.65 2e-145 Pentatricopeptide repeat-containing protein At4g21300 OS Arabidopsis thaliana GN PCMP-E36 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SVP7|PP307_ARATH 17 753 + 737 Gaps:128 84.87 1064 45.63 1e-134 Pentatricopeptide repeat-containing protein At4g13650 OS Arabidopsis thaliana GN PCMP-H42 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M1V3|PP296_ARATH 1 742 + 742 Gaps:108 80.21 960 45.97 2e-133 Pentatricopeptide repeat-containing protein At3g63370 OS Arabidopsis thaliana GN PCMP-H83 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SVA5|PP357_ARATH 7 745 + 739 Gaps:55 91.25 834 38.11 4e-131 Pentatricopeptide repeat-containing protein At4g39530 OS Arabidopsis thaliana GN PCMP-E52 PE 1 SV 1
blastp_uniprot_sprot sp|Q7Y211|PP285_ARATH 5 745 + 741 Gaps:134 82.36 890 46.38 8e-128 Pentatricopeptide repeat-containing protein At3g57430 chloroplastic OS Arabidopsis thaliana GN PCMP-H81 PE 2 SV 2
blastp_uniprot_sprot sp|Q3E9N1|PP359_ARATH 13 716 + 704 Gaps:41 95.10 775 32.16 1e-127 Pentatricopeptide repeat-containing protein At4g39952 mitochondrial OS Arabidopsis thaliana GN PCMP-E98 PE 2 SV 2
blastp_uniprot_sprot sp|Q0WN60|PPR48_ARATH 7 725 + 719 Gaps:88 76.70 970 45.03 2e-127 Pentatricopeptide repeat-containing protein At1g18485 OS Arabidopsis thaliana GN PCMP-H8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZQ74|PP146_ARATH 7 717 + 711 Gaps:92 92.89 689 47.97 4e-125 Pentatricopeptide repeat-containing protein At2g03380 mitochondrial OS Arabidopsis thaliana GN PCMP-E47 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LIE7|PP246_ARATH 31 743 + 713 Gaps:101 90.73 820 40.32 1e-124 Pentatricopeptide repeat-containing protein At3g22150 chloroplastic OS Arabidopsis thaliana GN PCMP-E95 PE 2 SV 1
rpsblast_cdd gnl|CDD|178626 7 745 + 739 Gaps:145 82.38 857 53.54 1e-132 PLN03077 PLN03077 Protein ECB2 Provisional.
rpsblast_cdd gnl|CDD|178630 4 743 + 740 Gaps:118 72.02 697 51.00 4e-80 PLN03081 PLN03081 pentatricopeptide (PPR) repeat-containing protein Provisional.
rpsblast_cdd gnl|CDD|178757 288 705 + 418 Gaps:125 38.58 1060 47.19 2e-11 PLN03218 PLN03218 maturation of RBCL 1 Provisional.
rpsblast_cdd gnl|CDD|205222 440 584 + 145 Gaps:1 98.00 50 46.94 1e-08 pfam13041 PPR_2 PPR repeat family. This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.

38 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 677 711 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 475 509 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 234 264 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Gene3D 508 583 76 G3DSA:1.25.40.10 none none IPR011990
Gene3D 164 296 133 G3DSA:1.25.40.10 none none IPR011990
ProSiteProfiles 409 439 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 440 474 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 541 575 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 163 204 42 PF13041 none PPR repeat family IPR002885
Pfam 541 588 48 PF13041 none PPR repeat family IPR002885
Pfam 440 487 48 PF13041 none PPR repeat family IPR002885
Pfam 266 312 47 PF13041 none PPR repeat family IPR002885
Pfam 239 259 21 PF01535 none PPR repeat IPR002885
Pfam 65 91 27 PF01535 none PPR repeat IPR002885
Pfam 414 439 26 PF01535 none PPR repeat IPR002885
ProSiteProfiles 265 299 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 63 97 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 1 14 14 PTHR24015 none none none
ProSiteProfiles 164 198 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 62 272 211 PTHR24015 none none none
PANTHER 399 759 361 PTHR24015 none none none
ProSiteProfiles 510 540 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 32 62 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 98 132 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 199 233 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 576 610 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 611 641 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 300 334 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 62 272 211 PTHR24015:SF293 none none none
ProSiteProfiles 336 374 39 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 16   Mitochondrion 5 0.443 0.444 NON-PLANT 16