Protein : Qrob_P0002630.2 Q. robur
Protein Identifier  ? Qrob_P0002630.2 Organism . Name  Quercus robur
Score  94.5 Score Type  egn
Protein Description  (M=3) PTHR24015:SF51 - UNKNOWN PROTEIN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 775  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100255915 77 766 + 690 Gaps:9 97.57 700 74.82 0.0 pentatricopeptide repeat-containing protein At2g03380 mitochondrial-like
blastp_kegg lcl|tcc:TCM_011604 78 773 + 696 Gaps:6 96.64 714 72.61 0.0 Pentatricopeptide repeat superfamily protein
blastp_kegg lcl|mdm:103416638 81 771 + 691 Gaps:5 96.22 715 72.82 0.0 pentatricopeptide repeat-containing protein At2g03380 mitochondrial-like
blastp_kegg lcl|mdm:103403269 81 771 + 691 Gaps:5 96.22 715 72.82 0.0 pentatricopeptide repeat-containing protein At2g03380 mitochondrial
blastp_kegg lcl|pmum:103321514 58 771 + 714 Gaps:8 99.02 713 71.25 0.0 pentatricopeptide repeat-containing protein At2g03380 mitochondrial
blastp_kegg lcl|cit:102619320 58 773 + 716 Gaps:10 99.86 709 72.32 0.0 pentatricopeptide repeat-containing protein At2g03380 mitochondrial-like
blastp_kegg lcl|cic:CICLE_v10033606mg 58 769 + 712 Gaps:10 98.32 716 72.44 0.0 hypothetical protein
blastp_kegg lcl|pxb:103947221 59 758 + 700 Gaps:8 97.88 707 69.94 0.0 pentatricopeptide repeat-containing protein At2g03380 mitochondrial
blastp_kegg lcl|fve:101294361 58 761 + 704 Gaps:8 98.58 706 70.55 0.0 pentatricopeptide repeat-containing protein At2g03380 mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa002695mg 125 771 + 647 Gaps:7 99.22 644 77.31 0.0 hypothetical protein
blastp_uniprot_sprot sp|Q9ZQ74|PP146_ARATH 68 758 + 691 Gaps:8 99.42 689 59.71 0.0 Pentatricopeptide repeat-containing protein At2g03380 mitochondrial OS Arabidopsis thaliana GN PCMP-E47 PE 3 SV 1
blastp_uniprot_sprot sp|Q3E6Q1|PPR32_ARATH 111 759 + 649 Gaps:3 80.35 809 37.69 4e-151 Pentatricopeptide repeat-containing protein At1g11290 OS Arabidopsis thaliana GN PCMP-H40 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SN39|PP320_ARATH 119 759 + 641 Gaps:14 74.86 871 48.16 7e-147 Pentatricopeptide repeat-containing protein At4g18750 chloroplastic OS Arabidopsis thaliana GN PCMP-H45 PE 2 SV 1
blastp_uniprot_sprot sp|O81767|PP348_ARATH 120 760 + 641 Gaps:13 77.52 823 39.34 1e-145 Pentatricopeptide repeat-containing protein At4g33990 OS Arabidopsis thaliana GN EMB2758 PE 3 SV 2
blastp_uniprot_sprot sp|Q9LFL5|PP390_ARATH 109 758 + 650 Gaps:121 81.18 850 45.36 2e-137 Pentatricopeptide repeat-containing protein At5g16860 OS Arabidopsis thaliana GN PCMP-H92 PE 2 SV 1
blastp_uniprot_sprot sp|Q7Y211|PP285_ARATH 131 758 + 628 Gaps:69 78.43 890 46.70 1e-132 Pentatricopeptide repeat-containing protein At3g57430 chloroplastic OS Arabidopsis thaliana GN PCMP-H81 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SS97|PP205_ARATH 80 759 + 680 Gaps:44 91.82 660 50.33 2e-128 Putative pentatricopeptide repeat-containing protein At3g01580 OS Arabidopsis thaliana GN PCMP-E87 PE 3 SV 2
blastp_uniprot_sprot sp|Q9FLZ9|PP405_ARATH 96 759 + 664 Gaps:53 95.57 677 43.74 6e-127 Pentatricopeptide repeat-containing protein At5g39350 OS Arabidopsis thaliana GN PCMP-E16 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SVA5|PP357_ARATH 80 760 + 681 Gaps:80 89.81 834 47.40 1e-125 Pentatricopeptide repeat-containing protein At4g39530 OS Arabidopsis thaliana GN PCMP-E52 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LUS3|PP237_ARATH 117 759 + 643 Gaps:38 100.00 654 45.41 2e-125 Pentatricopeptide repeat-containing protein At3g16610 OS Arabidopsis thaliana GN PCMP-E91 PE 2 SV 1
rpsblast_cdd gnl|CDD|178626 118 769 + 652 Gaps:48 81.10 857 55.83 1e-142 PLN03077 PLN03077 Protein ECB2 Provisional.
rpsblast_cdd gnl|CDD|178630 125 759 + 635 Gaps:18 68.29 697 40.55 1e-97 PLN03081 PLN03081 pentatricopeptide (PPR) repeat-containing protein Provisional.
rpsblast_cdd gnl|CDD|178757 377 702 + 326 Gaps:86 30.00 1060 33.02 5e-12 PLN03218 PLN03218 maturation of RBCL 1 Provisional.
rpsblast_cdd gnl|CDD|205222 476 524 + 49 none 98.00 50 34.69 5e-08 pfam13041 PPR_2 PPR repeat family. This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.

35 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 579 613 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 311 345 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 682 712 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 436 767 332 PTHR24015 none none none
PANTHER 175 384 210 PTHR24015 none none none
ProSiteProfiles 650 680 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 211 241 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 351 373 23 PF01535 none PPR repeat IPR002885
Pfam 379 402 24 PF01535 none PPR repeat IPR002885
Pfam 654 677 24 PF01535 none PPR repeat IPR002885
Pfam 249 277 29 PF01535 none PPR repeat IPR002885
Pfam 278 305 28 PF01535 none PPR repeat IPR002885
ProSiteProfiles 280 306 27 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 377 411 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 446 476 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 346 376 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 614 649 36 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 476 524 49 PF13041 none PPR repeat family IPR002885
Pfam 578 626 49 PF13041 none PPR repeat family IPR002885
ProSiteProfiles 548 578 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 477 511 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 70 101 32 PTHR24015 none none none
ProSiteProfiles 412 442 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
TIGRFAM 616 650 35 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 278 305 28 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 479 513 35 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 581 615 35 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
PANTHER 436 767 332 PTHR24015:SF51 none none none
Gene3D 356 504 149 G3DSA:1.25.40.10 none none IPR011990
Gene3D 710 735 26 G3DSA:1.25.40.10 none none IPR011990

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting