Protein : Qrob_P0001520.2 Q. robur
Protein Identifier  ? Qrob_P0001520.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=1) K12882 - nuclear cap-binding protein subunit 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 787  
Kegg Orthology  K12882
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0000339 RNA cap binding Interacting selectively and non-covalently with a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule.
GO:0005846 nuclear cap binding complex A conserved heterodimeric protein complex that binds to the 5' terminal cap structure m7G(5')ppp(5')N of nascent eukaryotic RNA polymerase II transcripts such as pre-mRNA and U snRNA. The consists of proteins known as CBP20 and CBP80, binds to cap structures in the nucleus, and is involved in pre-mRNA splicing, 3'-end formation, and RNA nuclear export.
GO:0045292 mRNA cis splicing, via spliceosome The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript.
GO:0051028 mRNA transport The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0016070 RNA metabolic process The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100265341 9 786 + 778 Gaps:21 89.24 855 84.01 0.0 nuclear cap-binding protein subunit 1-like
blastp_kegg lcl|tcc:TCM_040804 4 786 + 783 Gaps:10 89.93 864 82.50 0.0 ARM repeat superfamily protein isoform 1
blastp_kegg lcl|pmum:103326753 9 784 + 776 Gaps:11 89.13 865 82.88 0.0 nuclear cap-binding protein subunit 1
blastp_kegg lcl|pop:POPTR_0009s05380g 4 786 + 783 Gaps:11 89.63 868 81.62 0.0 POPTRDRAFT_722993 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa001278mg 9 784 + 776 Gaps:11 89.13 865 82.88 0.0 hypothetical protein
blastp_kegg lcl|cit:102628799 9 786 + 778 Gaps:12 89.58 864 82.43 0.0 nuclear cap-binding protein subunit 1-like
blastp_kegg lcl|pxb:103946972 4 786 + 783 Gaps:11 90.05 864 80.21 0.0 nuclear cap-binding protein subunit 1-like
blastp_kegg lcl|pxb:103930869 4 786 + 783 Gaps:11 90.05 864 79.95 0.0 nuclear cap-binding protein subunit 1-like
blastp_kegg lcl|rcu:RCOM_1579070 4 784 + 781 Gaps:11 94.17 824 81.19 0.0 cap binding protein putative
blastp_kegg lcl|fve:101310957 3 786 + 784 Gaps:10 90.05 864 79.31 0.0 nuclear cap-binding protein subunit 1-like
blastp_pdb 3fey_A 9 682 + 674 Gaps:91 78.61 790 32.21 2e-73 mol:protein length:790 Nuclear cap-binding protein subunit 1
blastp_pdb 3fex_A 9 682 + 674 Gaps:91 78.61 790 32.21 2e-73 mol:protein length:790 Nuclear cap-binding protein subunit 1
blastp_pdb 1n54_A 9 682 + 674 Gaps:91 78.61 790 32.21 2e-73 mol:protein length:790 80 kDa nuclear cap binding protein
blastp_pdb 1n52_A 9 682 + 674 Gaps:91 78.61 790 32.21 2e-73 mol:protein length:790 80 kDa nuclear cap binding protein
blastp_pdb 1h2v_C 9 682 + 674 Gaps:91 80.54 771 32.21 2e-73 mol:protein length:771 80 KDA NUCLEAR CAP BINDING PROTEIN
blastp_pdb 1h6k_C 9 682 + 674 Gaps:107 80.18 757 33.11 3e-73 mol:protein length:757 CBP80
blastp_pdb 1h6k_B 9 682 + 674 Gaps:107 80.18 757 33.11 3e-73 mol:protein length:757 CBP80
blastp_pdb 1h6k_A 9 682 + 674 Gaps:107 80.18 757 33.11 3e-73 mol:protein length:757 CBP80
blastp_pdb 1h2u_B 9 564 + 556 Gaps:59 74.00 723 32.34 2e-70 mol:protein length:723 80 KDA NUCLEAR CAP BINDING PROTEIN
blastp_pdb 1h2u_A 9 564 + 556 Gaps:59 74.00 723 32.34 2e-70 mol:protein length:723 80 KDA NUCLEAR CAP BINDING PROTEIN
blastp_uniprot_sprot sp|Q9SIU2|NCBP1_ARATH 11 784 + 774 Gaps:24 88.92 848 70.69 0.0 Nuclear cap-binding protein subunit 1 OS Arabidopsis thaliana GN ABH1 PE 1 SV 2
blastp_uniprot_sprot sp|Q10LJ0|NCBP1_ORYSJ 9 786 + 778 Gaps:13 88.93 867 64.33 0.0 Nuclear cap-binding protein subunit 1 OS Oryza sativa subsp. japonica GN ABH1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6GQ80|NBP1A_XENLA 23 674 + 652 Gaps:96 75.85 791 33.00 1e-75 Nuclear cap-binding protein subunit 1-A OS Xenopus laevis GN ncbp1-a PE 2 SV 1
blastp_uniprot_sprot sp|Q6GQD0|NBP1B_XENLA 9 674 + 666 Gaps:90 77.62 791 31.92 9e-75 Nuclear cap-binding protein subunit 1-B OS Xenopus laevis GN ncbp1-b PE 2 SV 1
blastp_uniprot_sprot sp|Q6DIE2|NCBP1_XENTR 9 674 + 666 Gaps:96 77.62 791 32.25 2e-73 Nuclear cap-binding protein subunit 1 OS Xenopus tropicalis GN ncbp1 PE 2 SV 1
blastp_uniprot_sprot sp|Q09161|NCBP1_HUMAN 9 682 + 674 Gaps:91 78.61 790 32.21 6e-73 Nuclear cap-binding protein subunit 1 OS Homo sapiens GN NCBP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q3UYV9|NCBP1_MOUSE 9 682 + 674 Gaps:93 78.61 790 32.85 5e-72 Nuclear cap-binding protein subunit 1 OS Mus musculus GN Ncbp1 PE 1 SV 2
blastp_uniprot_sprot sp|Q16UN6|NCBP1_AEDAE 9 674 + 666 Gaps:77 77.86 813 30.02 7e-72 Nuclear cap-binding protein subunit 1 OS Aedes aegypti GN Cbp80 PE 3 SV 1
blastp_uniprot_sprot sp|Q56A27|NCBP1_RAT 9 682 + 674 Gaps:93 78.61 790 32.69 1e-71 Nuclear cap-binding protein subunit 1 OS Rattus norvegicus GN Ncbp1 PE 2 SV 1
blastp_uniprot_sprot sp|C0H906|NCBP1_SALSA 23 674 + 652 Gaps:87 76.01 796 30.74 3e-71 Nuclear cap-binding protein subunit 1 OS Salmo salar GN ncbp1 PE 2 SV 1

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 712 774 63 PTHR12412 none none IPR027159
PANTHER 9 612 604 PTHR12412 none none IPR027159
PANTHER 631 678 48 PTHR12412 none none IPR027159
Pfam 417 689 273 PF09090 none MIF4G like IPR015174
Gene3D 729 776 48 G3DSA:1.25.40.180 none none IPR016021
Gene3D 653 682 30 G3DSA:1.25.40.180 none none IPR016021
Gene3D 417 572 156 G3DSA:1.25.40.180 none none IPR016021
SUPERFAMILY 402 569 168 SSF48371 none none IPR016024
SUPERFAMILY 650 682 33 SSF48371 none none IPR016024
SUPERFAMILY 729 776 48 SSF48371 none none IPR016024
SUPERFAMILY 209 402 194 SSF48371 none none IPR016024
Coils 569 604 36 Coil none none none
Pfam 10 114 105 PF02854 none MIF4G domain IPR003890
SUPERFAMILY 9 212 204 SSF48371 none none IPR016024
Gene3D 215 403 189 G3DSA:1.25.40.180 none none IPR016021
Coils 624 645 22 Coil none none none
Gene3D 10 207 198 G3DSA:1.25.40.180 none none IPR016021
Pfam 227 391 165 PF09088 none MIF4G like IPR015172

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting