2009
JOBIM 2009, Nantes, France
09 Jun 2009 The URGI plants and bioagressors genomic annotation system
Brault B, Alaux M, Legeai F, Reboux S, Luyten I, SidibeBocs S, Steinbach D, Quesneville H and Amselem J
The URGI genomic annotation platform, developed in the framework of the GnpAnnot project, relies on well known GMOD tools( http://gmod.org ): Apollo, Chado and GBrowse. Apollo is the graphical interface for visualization and annotation edition allowing curators to edit their genes according to evidences (transcript and protein similarity, comparative genomics). Manual annotations (gene curation validated/in progress) are saved in a dedicated Chado database and shared at the same time with other community annotations members. Validated genes/pseudogenes are then committed in the second Chado database accessible by GBrowse.
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