HTSeq: Analysing high-throughput sequencing data with PythonHTSeq is a Python package that provides infrastructure to process data from high-throughput sequencing assays ...
HMMER is an implementation of profile hidden Markov models (profile HMMs) for biological sequence analysis. Profile HMMs are statistical models of multiple sequence alignments. They capture position-specific information about how conserved each column of the alignment is, and which residues are likely.More information is ...