FEEDBACK  |  CONTACT  |  SITE MAP  |  ABOUT US   
Ask an account

Tools

You are here : Home / Home URGI / Tools

Tools

Tools are in free access Public access or restricted access Registered access

They run on the web, unix or both.

Tools in restricted access can use unpublished data.


ALL / A / B / C / D / E / F / G / H / I / J / K / L / M / N / O / P / Q / R / S / T / U / V / W /

free access url

DEA - Differential Expression Analysis workflow
DEA is a Galaxy workflow for the Differential Expression Analysis of RNA-Seq data between two conditions. It uses a bioinformatics protocol based on raw read counts from a mapping of the reads to the reference genome.DEA is composed of a RNA-Seq mapper (Tophat, Tophat2 ...

DESeq2
no picture available
Differential gene expression analysis based on the negative binomial distribution
Bioconductor version: Release (3.2)Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.Author: Michael Love (HSPH Boston), Simon Anders, Wolfgang Huber ...

DSK
no picture available
DSK is a k-mer counting software, similar to Jellyfish. Jellyfish is very fast but limited to large-memory servers and k ≤ 32. In contrast, DSK supports large values of k, and runs with (almost-)arbitrarily low memory usage and reasonably low temporary disk usage. ...

Decoder
no picture available
Amino acid translation program for full-length cDNA sequences with frameshift errors
...

Update: 02 Dec 2011
Creation date: 31 May 2011
PLATFORM   RESEARCH   PROJECTS   DATA   TOOLS   SPECIES   ABOUT US   FEEDBACK   CONTACT US   REGISTER   EDIT