PlantSyntenyViewer
Plant Synteny viewer is a project coordinated at scientific level by Jerome Salse INRA GDEC, funded by INRA GAP departement whose goal is to develop a graphical tool to display and to navigate between genes in ancestral chromosome and modern chromosomes. URGI is in charge of software development.
Duration: 01/01/2011 to 31/12/2011
Coordinator: Jerome Salse, Delphine Steinbach
Partner INRA GDEC Clermont-Ferrand : Jerome Salse
Role: scientific project manager
Partner INRA URGI Platform:
- software developper : Raphael Flores
- project URGI coordination : Delphine Steinbach
Results:
- The development of this new tool, Plant Synteny Viewer, guided by J. Salse needs, is now closed.
- The tool was used with real data given by J. Salse's team at INRA Clermont Ferrand. It is open for query for project partners with a login account
- A paper is in prep. in 2013, to present these data and the tools.
- The tool will be publicly available for query, on the URGI Web site, as soon as the publication will be accepted.
- A first demo of this tool was done at IJPB Versailles, in 2013 to french barley community
For interest in this tool, please contact Jerome Salse at clermont inra fr and Delphine Steinbach and Raphael Flores at versailles inra fr.
Publication:
WHEAT SYNTENOME UNVEILS NEW EVIDENCES OF CONTRASTED EVOLUTIONARY PLASTICITY BETWEEN PALEO- AND NEODUPLICATED SUBGENOMES
Pont, Caroline; Murat, Florent; Guizard, Sebastien; Flores, Raphael; Foucrier, Severine; Bidet, Yannick; Quraishi, Umar Massod; Alaux, Michael; Dolezel, Jaroslav; Fahima, Tzion; Budak, Hikmet; Keller, Beat; Salvi, Silvio; Maccaferri, Marco; Steinbach, Delphine; Feuillet, Catherine; Quesneville, Hadi; Salse, Jerome
The Plant Journal, in press
Launch Plant Synteny Viewer:
Creation date: 07 Dec 2011
eZ PublishPublication supervisor: A-F. Adam-Blondon
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