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2017

International,  COM (posters)

[Présentation orale]. PAG XXV - Plant and Animal Genome Conference (2017-01-13-2017-01-18) San Diego (USA). 2017.

13 Jan 2017   The IWGSC Reference genome browser, data mining and beyond

Alaux, M. ; Letellier, T. ; Alfama Depauw, F. ; Rogers, J. ; Choulet, F. ; Guerche, C. ; Loaec, M. ; Flores, R. ; Michotey, C. ; Adam-Blondon, A.-F. ; Paux, E. ; Eversole, K. ; Quesneville, H.

URGI is a genomics and bioinformatics research unit at INRA (French National institute for Agricultural Research), dedicated to plants and crop parasites. We develop and maintain a genomic and genetic Information System called GnpIS that manages multiple types of wheat data.
Under the umbrella of the IWGSC (International Wheat Genome Sequencing Consortium), we have set up a Sequence Repository on the Wheat@URGI website to store, browse and query the data being generated by the consortium: http://wheat-urgi.versailles.inra.fr/Seq-Repository.
The repository holds the wheat physical maps and sequences, especially the gold standard IWGSC reference sequence of all the pseudomolecules. We set-up dedicated tools:
a genome browser to display the reference sequence and his incoming annotations.
a BLAST server to query the sequence and provide links to browsers.
a InterMine datawarehouse to integrate the genomics data with genetics and phenomics data to go beyond.

In ProdINRA

Update: 23 Aug 2018
Creation date: 31 Jul 2018